<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04869

Description Uncharacterized protein
SequenceMDTNTKMKTLRWKLPEFRKRFMKQCLEGVVNQSDEPSTSGLVRQLERFELKLNGAADNEAEYCHWLSKKTKELFSQPPMNAESKPCLSNSNASGEVFPSQETGKSANTDWKEQVYQEIQKMNSAYFSKVYVSYLEMNKALQQLASFPQGSNTNLLEKLIKKMKQTGCILELFKLKKCQITIDTKKILDEAEKFVESNFSPKNVSSHHQGPSHSSISPLKIIETKPSQQAWGTQNYYIRKDVSGENKPCLKEKQVKIMETKPSTQVLGTQNFHIWKDVSQQTKPQQAKIIETKSSAQVLGAQNFYIWKDVSQQTKPQQEKIIETNPPTQVLETQNFQIWKDVSQQIKPQQEKIIETKTSTQVLGTQNSHIWKDVSQQIKPQQAKIIETNPLPQPLGTQNSCIWKDVSHQNKPCLKEQQLKIVEAKPSTQQLGPQNSSILNLVSQQNKPCLKEQQVEKQYSNFPQHVDQVSIMKGPDNAVQKQAQGSEKASEALRVSVNSLETSASPLTENCNKLKEFSDKSTLNFDEPSDEVKRILKVLAVISPEALSASVNEMRDAVYLNDVMATSEFLDEPREMVQQQNQPDLIAQTGKSEAFSQAGRKRSRSHSFNQLSDAEEPDWTSVAYKKKKPRILENSSLLEELKEINHRLVDSVIVVGENVSFLKAPGVAAEDSEGLVIEFLFNAVSFNMNVESHTFADKKSIIKPLRLFVPTNYPTSLPVIVDKELSEVSTECQKDLSTIAKSKLIRFLRCLDRTWSLEDIAMSWERCARETVLECAKTFGGETFSSIYGEWENYQTEVMS
Length799
PositionTail
OrganismPhaseolus angularis (Azuki bean) (Vigna angularis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.07
Grand average of hydropathy-0.658
Instability index40.67
Isoelectric point7.78
Molecular weight90683.83
Publications
PubMed=26460024

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04869
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     376.96|      28|      29|     264|     291|       1
---------------------------------------------------------------------------
  219-  247 (41.17/20.54)	...KIIETkpsqQAWGTQNYYIRKDVSGENKP
  252-  283 (56.99/30.97)	KQVKIMETkpstQVLGTQNFHIWKDVSQQTKP
  284-  315 (58.08/31.69)	QQAKIIETkssaQVLGAQNFYIWKDVSQQTKP
  316-  347 (56.64/30.74)	QQEKIIETnpptQVLETQNFQIWKDVSQQIKP
  348-  379 (59.35/32.52)	QQEKIIETktstQVLGTQNSHIWKDVSQQIKP
  380-  411 (58.96/32.27)	QQAKIIETnplpQPLGTQNSCIWKDVSHQNKP
  416-  447 (45.77/23.57)	QQLKIVEAkpstQQLGPQNSSILNLVSQQNKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     164.82|      42|      42|     492|     533|       2
---------------------------------------------------------------------------
  492-  518 (33.52/14.13)	..................LRV.SVNSLETS.ASP.LTENC...NKLKE...FSD
  519-  561 (43.93/20.52)	KS.TLNF.DEPSDEVKRiLKVlAVISPEA......LSASV...NEMRDavyLND
  563-  596 (34.33/14.63)	MA.TSEFlDEPREMVQQ.............qNQPdLIAQT...GKSEA...FSQ
  601-  645 (53.04/26.12)	RSrSHSF.NQLSDAEEP.DWT.SVAYKKKK.PRI.L.ENSsllEELKE...INH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.67|      40|      42|     693|     733|       4
---------------------------------------------------------------------------
  693-  733 (62.72/47.04)	TFAdKKSIIKPLRLFVPTNYPTSLPVIVDKELSEVSTECQK
  737-  776 (69.95/47.68)	TIA.KSKLIRFLRCLDRTWSLEDIAMSWERCARETVLECAK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04869 with Med15 domain of Kingdom Viridiplantae
Unable to open file!