<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04856

Description Uncharacterized protein
SequenceMKESYLPELNEMYQKIASKLQQQDSLPQQPKSEQLDKLKVFKMMLERIITFLQVSKSNISPSFKEKLGSYEKQIINFINTNRPKKNIPGQLPPPHMHSMSQSQSQVTQVQSHENQINSQLQTSNMQGSVATMQQNNMPNMQHNSLSGVSTAQQSKMNSMQPNSNLDSGPGNAVNSLQQVPVSSLQQNPVSASQQTNVNSLSSQSGVNVIQSNLNPLQQGSSMLQHQQLKQQEQQMLHNQQIKQQYQRQLIQRKQQQIMQQQQQQQQQLHQTAKQQLPAQLPTHQLQQLHQMNDANDIKMRQGIGVKPGVFQSHLTSSQRSSYPHQQMKGSPFPVSSPQLLQATSPQIPQHSSPQVDQQNHLPSLTKVATPLQSANSPFVVPTPSPPLAPSPMPGDSEKPISGISLISNAVNIGYQQSGGATAPAQSLAIGTPGISASPLLAEFTGPDGALGNAFVSTSGKSTVTEQPIERLIKAVKSMSSKTLCSAVSDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVAMTNCRLQARNFIAQDGANGTRRMKRYTYATPLNVVSSAGSMNDSIKQLTASEVSDLDSTATSRFKMPRVEANHSLLEEIREVNQRLIDTVVDISNEEVDPTAAAAAAEGTEGTIVKCSYNAVALSPSLKSQYASVQMSPIQPLRLLVPTNYPNCSPILLDKFPVESGKENEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEHAQQSGGGSFSSKYGTWENCLTT
Length753
PositionTail
OrganismPhaseolus angularis (Azuki bean) (Vigna angularis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.04
Grand average of hydropathy-0.553
Instability index64.93
Isoelectric point9.11
Molecular weight81915.29
Publications
PubMed=26460024

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04856
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.18|      19|      19|     129|     147|       1
---------------------------------------------------------------------------
  125-  144 (30.01/ 9.84)	MQGsVATMQQNNMPNMQHNS
  145-  163 (29.17/ 9.36)	LSG.VSTAQQSKMNSMQPNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     105.88|      19|      19|     239|     257|       2
---------------------------------------------------------------------------
  203-  221 (27.34/ 9.62)	QSGVNVIQSNLNPL..QQGSS
  224-  243 (25.46/ 8.45)	QHQ.QLKQQEQQMLhnQQIKQ
  244-  262 (28.12/10.10)	QYQRQLIQRKQQQI.mQQ.QQ
  263-  283 (24.96/ 8.14)	QQQQQLHQTAKQQLpaQLPTH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     203.91|      45|      45|     307|     351|       3
---------------------------------------------------------------------------
  307-  346 (69.23/33.75)	.......P..GV.FQSHLTSSQRSSY........PHQQMK...GSPF..PVSSPQLLQ.ATSPQ
  347-  391 (58.09/27.04)	IPQHS.sP..QVdQQNHLPSLTKVAT........PLQSAN....SPFvvPTPSPPL...APSP.
  392-  447 (51.64/23.15)	MPGDSekPisGI...SLISNAVNIGYqqsggataPAQSLA..iGTPG..ISASPLLAE.FTGPD
  643-  682 (24.95/ 7.07)	.................LSPSLKSQY..asvqmsPIQPLRllvPTNY..PNCSPILLDkFP...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.71|      15|      83|     467|     492|       4
---------------------------------------------------------------------------
  477-  492 (22.34/31.06)	SMSSKTLCSAVSDiGS
  495-  509 (26.36/ 8.08)	SMNDRIAGSAPGN.GS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.10|      20|      85|      90|     111|       5
---------------------------------------------------------------------------
   90-  109 (37.13/19.05)	QLPPPHMHSMSQSQSQVTQV
  178-  197 (33.96/11.42)	QVPVSSLQQNPVSASQQTNV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.13|      23|      27|      36|      59|       9
---------------------------------------------------------------------------
   12-   27 (18.03/ 7.80)	........MYQKIASKLQQ..QDSLP
   36-   59 (32.96/27.19)	DKLKVFKmMLERIITFLQV..SKSNI
   65-   87 (29.14/17.95)	EKLGSYE...KQIINFINTnrPKKNI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04856 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FINTNRPKKNIPGQLPPPHMHSMSQSQSQVTQVQSHENQINSQLQTSNMQGSVATMQQNNMPNMQHNSLSGVSTAQQSKMNSMQPNSNLDSGPGNAVNSLQQVPVSSLQQNPVSASQQTNVNSLSSQSGVNVIQSNLNPLQQGSSMLQHQQLKQQEQQMLHNQQIKQQYQRQLIQRKQQQIMQQQQQQQQQLHQTAKQQLPAQLPTHQLQQLHQMNDANDIKMRQGIGVKPGVFQSHLTSSQRSSYPHQQMKGSPFPVSSPQLLQATSPQIPQHSSPQVDQQNHLPSLTKVATPLQSANSPFVVPTPSPPLAPSPMPGDSEKPIS
77
401










Molecular Recognition Features






MoRF SequenceStartStop




1) IINFI
74
78