<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04842

Description Uncharacterized protein
SequenceMQRYHAGSCTSAVNNTAVGGQSTRDIGRTDSSSLPANFPLSSRRQPLLTPYKLKCDKEPLNSRLGPPDFHPQTPNCPEETLTREYLQSGYRDTVEGLEESREISLTQVPNFNKAHVLNCKEAIRKRLRAINESRVQKRKAGQVYGVALSGSQLAKPGVFPEQRPCPEDFKKKWIEGLSQQHKRLRSLVDLVPHVRRKSLLEVLIRNNVPLLRATWFIKVTYLNVVRPGSASISSGIGDKTQQTCSELWTKDVIEYLQTLLDEFFSKNSSHFTHNRDRSPQLPYTASLQHRNDQLSISDGEEPSLHFKWWYIVRLLQWHHTEGLLIPSLIIDWVLRQLQEKQLLEIWQLLLPIVYGFLEIVVLSQTYVRTLAGVALRVIRDPAPGGSDLVDNSRRAYTTSALIEMLRFLILAAPETFVALDCFPLPSSVVSYAINEGSFILKATEAAGKIKNSSEDVCLFKSKGFDAQYQSLAFDHVISCIQERVQDLTKAVKPGYPGQYLAKAAQALDKSLVLGDLHGAYKFLFEDLCDETVSEGWVAKVSHCLRLSLKWFRTVNTSFIYSVFYLCEWATCDFRDFRTAPCDVKFTGRKDLSEVHIAIRLLKMKLRDMQISTRQKSGNTRGHGVSYLGKCSGHQSNRNFVKNASRTKSSSRSMDQNICSSAIFESPGPLHDIIVCWIDQHMVHKGEGLKRVYLLVVELIQAGIFYPLAYVRQLIVSGIMDMNVVDLERQKRHCQILKQLPKKFVRDALVESGISEGPQLTEALQIYLNERSLILRCSLWENHGNGSNVSISSLKQKQCISSTKEKASTLSIDQLKSAPSNKTSSKSGKDGSGVEDLKTFISALLQLPKSLSNLGSIGLDESQGSVRKPIGSQSKIDLVETTPGCEECRKAKRQKLSEERSLFVQAPSPVLSDDEDTWWAKKGLKSSEPLKVDQPLKPIKQVTKTRQKTVRKTQSLAQLAASRIEGSQGASTSHMCDNKVSCPHHRTAMHGDTARSVDGIQLSECEDIVSIGKALKRLRFVERKEIALWLMTVIRQLIEESEKVVGKVSQFGRPFATMDDKSSIRWKLGEDDLSALLYLMDVSDDLVSAVKFLLWLLPKVYSSPNSTIHSGRNVLMLPRNVENQACDVSEAFLLSSLRRYENILAAADLIPETLSSVMQRAAAIMASNGRVSGSGALAFARYLLKKYGNVVSVSEWEKNFKSTCDKRLAFEIESGRSVDGELGLPLGVPAGVEDPDDFFRQKISGGRLPSRVGSGMRDVVQRNVEEAFHYLFGKDRKLFAAGTPKGPTFEKWDNGYQIAQQIVVGLIDCIRQTGGAAQEGDSSLVTSAVSAIVGSVGPTLAKLPDFSAGSNQSNMSLATSSLNYAKCILRMHITCLCLLKEALGERQSRVFEIALAMEASTALAGVFAPSKASRAQFQMSPETHDTGTIPSDVSNNSSKIVVARTTKISAAVSALVVGAIISGVVSLERIVTILRLKEGLDVVQFVRSTRSNSNGSVRSVGAFKVDSSVEVHVHWFRLLVGNCRTICEGLVVDLLDEPSIVALSRMQRMLSLSLVFPPAYSIFSFVMWRPFVMNANVAFREDMNQLYQSLTMAISDAIKHLPFRNVCLRDCQGLYDLMAANMTDAEFATLLELNGSDIHSKSVAFIPLRARHFLNALIDCKMPQSIYTKEEGSRNSGHGESKIDFTDSESTLQDKLVDVLDALQPAKFHWQWVELRLLLNEQALIEKMKMHDISLADAIQLSSPSSEKSGASENENNFIEIILTRLLVRPDAAPLFSEVVHLFGKSLEDSMLLQAKWFLAGQDVLFGRKTIRQRLINIAESKRFSIKTQFSEPWGWCASCKDPATLKGDKKKVDSMPLEEGEVVEEGMDVKRSIKGFSPVFDSERSTSKQQHGTERALLELILPCIDQSSDESRNSFASDLIKQLNYIEQQIALVTRGPTKPVNTPATEGQTNKVNSRKNIRSGSPGLARRPTPTPDSSSLSPAALRASISLRVQLLMRFLPIICTDGESSVRSMRYTLASVLLRLLGSRVVHEDAMVNAMQYSPLRKEAESPAEAAFVDSSVECLFDRLLLILHGLLSSSLPSWLRSKSVVKTANESAREFSGFDREPLEALQNHLDNMQLPDTIRWRIQAAMPVLPPTIRCHFSCQLPTVPTSALASLQPNTTNSGFNSSSSTVPQRNSVPSSRTTASGKSKQQENDLDIDPWMLLEDGAGSCPSANNTNIIGSGDRVNIRAASWLKGAVRVRRTDLTYVGAVDEDS
Length2258
PositionKinase
OrganismPhaseolus angularis (Azuki bean) (Vigna angularis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.07
Grand average of hydropathy-0.227
Instability index50.35
Isoelectric point8.82
Molecular weight250546.95
Publications
PubMed=26460024

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04842
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.72|      17|      19|      39|      57|       1
---------------------------------------------------------------------------
   39-   55 (32.52/18.50)	PLSSR.RQPLLTPYKLKC
   59-   76 (32.20/12.33)	PLNSRlGPPDFHPQTPNC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     179.09|      58|     104|    1048|    1113|       4
---------------------------------------------------------------------------
 1048- 1113 (86.44/78.84)	SQFGRPFATMDDKSSIRwklGEDDLSALLYLMDVSDDLVSAVKfllWllPKVYSSPNS.....TIHSGRNV
 1155- 1217 (92.65/60.75)	SVMQRAAAIMASNGRVS...GSGALAFARYLLKKYGNVVSVSE...W..EKNFKSTCDkrlafEIESGRSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.30|      13|      21|     302|     321|       5
---------------------------------------------------------------------------
  302-  316 (21.18/29.29)	PSLHFKWwyIVRLLQ
  326-  338 (25.12/ 8.25)	PSLIIDW..VLRQLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.30|      20|     104|    1834|    1854|       6
---------------------------------------------------------------------------
 1834- 1854 (34.62/28.01)	GWCASCKDPATlKGDKKKVDS
 1937- 1956 (36.67/24.54)	GPTKPVNTPAT.EGQTNKVNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.81|      14|     104|     848|     863|       8
---------------------------------------------------------------------------
  825-  838 (23.73/12.80)	KSGKD.GS.GVEDLKT
  848-  863 (15.08/15.67)	KSLSNlGSiGLDESQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.16|      15|      19|     485|     499|       9
---------------------------------------------------------------------------
  485-  499 (28.63/18.19)	QDLTKAVKPG.YPGQY
  505-  520 (21.54/11.77)	QALDKSLVLGdLHGAY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.03|      22|      23|    1995|    2016|      10
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 1995- 2016 (39.96/27.61)	L...LMRFLPIICTDGESSVRSMRY
 2018- 2042 (31.06/19.60)	LasvLLRLLGSRVVHEDAMVNAMQY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.85|      14|      19|     536|     552|      18
---------------------------------------------------------------------------
  539-  552 (26.60/21.59)	KVSHCLRLSLKWFR
 1503- 1516 (26.25/10.62)	KVDSSVEVHVHWFR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04842 with Med12 domain of Kingdom Viridiplantae
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