<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04835

Description Uncharacterized protein
SequenceMDDMDLQISLDKLPIKRLDSIEENGMERFPPDVDYDEKRLSLIRRIDFAWAIEKDEEKKKQKKSSKETSTPWQWQSMVENLQLAHQELSVIIDLINTVEANDAVTVASMTRPKLLPNEALSDLAVSAATKLQCYRQVGKYFKQSAKAFEQQVAREARFYGALIRLQQNWKVKRQRQAAIVPGNEGFTFDLFDNSYDQASIIRSLSMSTVRVNHDAAGMLAINMSPDLCHSLQFGFVGAQSDDILRNFKQNKSRISDDHSLGETGKEYSTDEECVKKTHTLLREVHEAIFNEQVFDLVNREAFTTVTGVSVTGIRENYLQLSLGQGTSVYLALVSNGQEHSTVENELTSNAENAMLPLESSDGMNREAKQNAPKKGLFSNSICYEIYIQQIFHEHIFGKGGEKPISSGNRLSGVQAKETKDGGSNLLGHFFMSLSHRIFSTKVLVELENVVSKVPYLQLITNPTWHSRASSWTLYMEVPQSILRGSQIKTSDCLEKNAVKRQFWIKAVVNDNCINVKAEGSPNVAGLFKGKIEETHSINKYNCNLADLPVIILQQVASQIINWLYQEALMVGIKANRDFLCLSFELEQGETLGLVASVDPEDVEGCISWWLVMEDSFAEEQKLHMNITDGASEYRKFLGHLSLDLLYATLIDLVGLCSGGSGQ
Length662
PositionHead
OrganismPhaseolus angularis (Azuki bean) (Vigna angularis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.08
Grand average of hydropathy-0.323
Instability index39.90
Isoelectric point5.43
Molecular weight74377.45
Publications
PubMed=26460024

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04835
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     134.37|      46|     116|     348|     393|       3
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  348-  373 (30.21/16.35)	........................................SNAENAMLPLE............SSDGMN.REAKQNAPK
  374-  424 (64.50/43.53)	KGLFSNSICYEIYIQQIFHE................hifgKGGEKPISSGN............RLSGVQaKETKDGGSN
  426-  497 (39.65/23.84)	LGHFFMSLSHRIFSTKVLVElenvvskvpylqlitnptwhSRASSWTLYMEvpqsilrgsqikTSDCLE.KNA......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.52|      24|      56|     571|     594|       5
---------------------------------------------------------------------------
  571-  594 (41.63/30.27)	GIKANRDFL.CLSFELEQGETLGLV
  629-  653 (35.89/25.09)	GASEYRKFLgHLSLDLLYATLIDLV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04835 with Med17 domain of Kingdom Viridiplantae
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