<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04833

Description Uncharacterized protein
SequenceMPSPKKSLKRHHHQMNNDNGRPNQGTEGNSHWRDGLHPEIRQMNINKMVESLKRHLPDSGQDVLPELHMIAQKFEEKIFNAATSWPDYLLKISSKMHSIDTGCQCTKANPPNQVTYIKVEAQQSDTQSVIVPTPSPKISLKRHQHQMDNDNGRPNQGTETISHWRDGLHPETRQIKFNMIMDMLKRHVPYSSQEGLHELQCIAQRFEEKIFTAATSQSDYVRKISMKMLTPENKSQGSMVNVPSQSGSRTI
Length251
PositionTail
OrganismPhaseolus angularis (Azuki bean) (Vigna angularis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.05
Grand average of hydropathy-0.938
Instability index57.35
Isoelectric point9.20
Molecular weight28738.24
Publications
PubMed=26460024

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04833
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.70|      13|      42|       6|      18|       1
---------------------------------------------------------------------------
    6-   18 (27.58/14.73)	KSLKRHHHQMNND
   50-   62 (23.32/11.55)	ESLKRHLPDSGQD
  138-  150 (26.80/14.15)	ISLKRHQHQMDND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     310.09|      82|     130|      19|     113|       2
---------------------------------------------------------------------------
   19-  113 (157.43/110.75)	NGRPNQGTEGNSHWRDGLHPEIRQMNINKMVeslkrhlpdsgqdVLPELHMIAQKFEEKIFNAATSWPDYLLKISSKMHSIDTGCQCTKANPPNQ
  151-  245 (152.66/107.18)	NGRPNQGTETISHWRDGLHPETRQIKFNMIMdmlkrhvpyssqeGLHELQCIAQRFEEKIFTAATSQSDYVRKISMKMLTPENKSQGSMVNVPSQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04833 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DTQSVIVPTPSPKISLKRHQHQMDNDNGRPNQGTETISHWRDGL
2) MPSPKKSLKRHHHQMNNDNGRPNQGTEGNSHWRDGLHPEIRQMNINKMVESLKRHLPDSGQDVLPEL
3) RKISMKMLTPENKSQGSMVNVPSQSGSRTI
125
1
222
168
67
251










Molecular Recognition Features






MoRF SequenceStartStop




1) MPSPKKSLKRHH
1
12