<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04830

Description Uncharacterized protein
SequenceMNQIAGTKDPEAEPVAQSLPQPQDTPKPPDKTDSAAVVVAATTTTEEKEVGPEEKRPVPMEEDSLNPAIVFSIRLKQPRSNLLHKMSVPELCRNFSAVSWCGKLNAIACAAETCARIPSSTTNPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRVTIWTQPSQGPANLVHDTSCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSAPANAKSTFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPSKNDTTPKWFCTSKGLLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGFQVAPKTSTTCAVPPLSPPNWAGFAPLAAYLFSWQDYLLSEAKQGKKQTDQNLLDAVPLYCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRAGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQHVVLHPIFGNPTSSMGGQSPMQTVWQSKVDLSITPTNDFKSHQSPATGMASDVQKVSESGSDKSTRVNFDPFDLPSDVRTLARVVYSAHGGEIAIAFLRGGVHVFSGPNFTPVDNYQINVGSAIAAPAFSSTSCCSASVWHDSSKNCTILRIIRVLPPSIPISQVNANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGSNAQEVRAMVLDMQARLLLDMLGKGIESALINSSALVPEPWQASGETLSSIDPETMAVEPALIPSIQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPATSQGGQNGTSSSMGSAQLQTWVQGAIAKISNTTEGGSNPTPNPISGPSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRYMGSANRTSDANTQKPQSNTPAPGKVEEIAKPAVVKSDDGQSGRAGPKGAEEVPSGRSRLGSGNAGQGYTFEEVKVLFMMLMDLCRRTAGLQHPLPVSQVGSINIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDQEDVDCANDAPKLVNSDPLDFSSMEHSDVYYGTHRLWPRKRRMSERDAAFGLNTSVGLGGYLGIMGSRRDVVTATWKTGLEGVWYKCVRCQRQTSAFSSPDAPPSLSPTDREVWWISRWVHGCPMCGGTWARVV
Length1242
PositionTail
OrganismPhaseolus angularis (Azuki bean) (Vigna angularis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.08
Grand average of hydropathy-0.226
Instability index47.82
Isoelectric point6.27
Molecular weight134639.58
Publications
PubMed=26460024

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04830
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.03|      37|     526|     581|     677|       1
---------------------------------------------------------------------------
  582-  626 (58.48/113.95)	SGPN.FTPVdnyQINVGSAIAAPAFSSTSCCsasvwHDSSKNCTIL
  887-  924 (67.56/17.10)	SGPStFMPI...SINTGTFPGTPAVRLIGDC.....HFLHRLCQLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     174.74|      40|     114|     396|     435|       2
---------------------------------------------------------------------------
  396-  435 (68.43/31.98)	VPLYCSPVSNFSAYVSPEAAAQSAATTTWGSG...VTAVAFDP
  473-  503 (44.45/18.41)	SSLQHVVLHPIFGNPTSSMGGQSPMQTVWQS............
  505-  547 (61.86/28.26)	VDLSITPTNDFKSHQSPATGMASDVQKVSESGsdkSTRVNFDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.20|      27|     525|     630|     677|       3
---------------------------------------------------------------------------
  650-  677 (48.63/51.90)	RAIAERFWWSLLVGVdWWDAVGCT.QSAA
 1177- 1204 (47.58/15.35)	RDVVTATWKTGLEGV.WYKCVRCQrQTSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.52|      35|     114|     811|     845|       4
---------------------------------------------------------------------------
  811-  845 (60.42/36.12)	FCRTLASHAVTAGTGSNRNMVASPTQ..SSATPATSQ
  926-  962 (60.11/35.90)	FCFFFRRTQLPRYMGSANRTSDANTQkpQSNTPAPGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     243.10|      76|     245|      28|     127|       5
---------------------------------------------------------------------------
   28-  127 (111.77/113.47)	PPDKTDSAAVVVaaTTTTEEKEVGPEEkrpvPMEEDSL...NPAivfsirlkqprsnlLHKMSVPeLCRNFSAVSWC...GKLNAIACA...AETCARIPSSttnPPFW
  276-  360 (131.33/78.57)	PPSKNDTTPKWF..CTSKGLLGCGPSG....IMAGDAIitdSGA..............MHVAGVP.IVNPSTIVVWEvtpGPGNGFQVApktSTTCAVPPLS...PPNW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.79|      10|      15|     172|     181|       6
---------------------------------------------------------------------------
  172-  181 (19.70/11.02)	ANFHGRVTIW
  189-  198 (20.08/11.37)	ANLVHDTSCW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04830 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GTGSNRNMVASPTQSSATPATSQGGQNGTSSSMG
2) MGSANRTSDANTQKPQSNTPAPGKVEEIAKPAVVKSDDGQSGRAGPKGAEEVPSGRSRLGSGN
3) MNQIAGTKDPEAEPVAQSLPQPQDTPKPPDKTDSAAVVVAATTTTEEKEVGPEEKRPVPMEED
823
939
1
856
1001
63










Molecular Recognition Features






MoRF SequenceStartStop




1) EAEPVAQSL
11
19