<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04828

Description Uncharacterized protein
SequenceMDSNDFRSILESAGIDIWMLMDVAIAVASADHSDELRRRRDGIVERLYATSFLSSSRCPNCNIDDVRETEMQSNPSAEEEKDTCEVLFDDEQKKILEIKEQLEDPHQSKDSLLELLQNLADMDITFRALQETDIGRHVNRLRKHSSNDVKKLVKLLVRKWKEIIDEWVKLKTPGEASTTVMADEDSPQDKIQQNEHRQIPDFADSPNPHNESFGSEHNNIEPQQRKPKAIPHKESPLKPSASVTTPILAPQNRQRESNFELDKLASARKRLQENYKEVANAKKQRTIQVMDLHELPKPKNAYFGKGKGGTSQGRHW
Length316
PositionUnknown
OrganismPhaseolus angularis (Azuki bean) (Vigna angularis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.05
Grand average of hydropathy-0.940
Instability index55.40
Isoelectric point5.87
Molecular weight36239.21
Publications
PubMed=26460024

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04828
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.31|      22|      27|     204|     226|       1
---------------------------------------------------------------------------
  183-  201 (25.33/ 8.70)	DEDSPQDKIQQNEHRQIPD...
  204-  225 (40.48/19.81)	DSPNPHNESFGSEHNNIEPQQR
  234-  253 (30.51/11.70)	ESPLKPSASVTTPI..LAPQNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.42|      10|      15|      95|     104|       3
---------------------------------------------------------------------------
   95-  104 (15.91/11.36)	ILEIKEQLED
  112-  121 (15.51/10.89)	LLELLQNLAD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04828 with Med26 domain of Kingdom Viridiplantae
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