<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04826

Description Uncharacterized protein
SequenceMDHYGSSGGSWTMIPTHNSNVQSQSNQDPNVFLQQQQQQQQFLQPQPFQQALQPQSPFQQHQHLYQQQQQQQRLLQQQQQQQQQQQQNLHQSLASHYHLLHLVENLSEVIEHGNPDQQSDALINELSNHFEKCQQLLNSISESISTKAMTVEGQKKKLEESEQLLNQRRDLIANYRKSVEELVRSEP
Length187
PositionMiddle
OrganismPhaseolus angularis (Azuki bean) (Vigna angularis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.05
Grand average of hydropathy-1.171
Instability index89.87
Isoelectric point5.74
Molecular weight21881.72
Publications
PubMed=26460024

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04826
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.44|      22|      30|      22|      50|       1
---------------------------------------------------------------------------
   22-   43 (43.24/17.95)	QSQSNQDPNVFLQQQQQQQQFL
   53-   74 (45.19/ 9.30)	QPQSPFQQHQHLYQQQQQQQRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.92|      28|      31|      83|     110|       2
---------------------------------------------------------------------------
   83-  110 (47.94/23.65)	QQQQQNLHQSLASHY.HLLHLVENLSEVI
  116-  144 (42.98/20.50)	DQQSDALINELSNHFeKCQQLLNSISESI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04826 with Med9 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDHYGSSGGSWTMIPTHNSNVQSQSNQDPNVFLQQQQQ
1
38










Molecular Recognition Features






MoRF SequenceStartStop




1) FLQPQPFQ
2) MDHYGSSGGSWTMIPTHNSNVQ
42
1
49
22