<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04824

Description Uncharacterized protein
SequenceMLTKKFIEADPIDVTLSLKDRPRELTGAVDLISHFKLLPHYEFFCKRPLPVPIADTHYLHNVVGDTEIRKGDGMQLDQLIQYTSSFRDTNARIQPFDLDVLKEAFQLRETAPVDLPAAEKGIPTISGKSKSENKDKEKKHKKHKDKDKDKDKDKDKEHKKHKHRHKDRSKDKDKDKDRDKKKDKSGHRDSSADHSKKHHEKKRKHDGDDDVNDVHKHKRSKHKSSKIDELGAIKVAG
Length237
PositionHead
OrganismPhaseolus angularis (Azuki bean) (Vigna angularis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.04
Grand average of hydropathy-1.402
Instability index32.28
Isoelectric point9.47
Molecular weight27443.71
Publications
PubMed=26460024

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04824
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.09|      19|      19|     135|     153|       1
---------------------------------------------------------------------------
  135-  153 (38.36/12.52)	DKE.KKH.K.KHKDKDKDKDKD
  155-  175 (29.40/ 8.10)	DKEhKKH.KhRHKDRSKDKDKD
  189-  208 (27.33/ 7.07)	DSS.ADHsK.KHHEKKRKHDGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.68|      15|      20|      80|      98|       2
---------------------------------------------------------------------------
   80-   98 (21.62/23.67)	IQYTSSFRDTnariQPFDL
  101-  115 (24.06/15.36)	LKEAFQLRET....APVDL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04824 with Med19 domain of Kingdom Viridiplantae
Unable to open file!