<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04816

Description Uncharacterized protein
SequenceMQRYHAGSCTSAVNNSAIGGPSTRDTGRSDSPSLPANFSVSSRRQPPLNPYKLKCDKEPLNSRLGAPDFHPQTSNCPEETLTREYLQSGYRDTVEGLEEAREISLTQVPHFNKNVVLDCKEAIRKRLRAINESRAQKRKAGQVYGVALSGSQLARSGIFPELRPCGEDFQKKWIEGLSQQHKRLRSLADHVPHGYKRASLLDVLIRNNVPLLRATWFIKVTYLNQVQPGSVGISSGTADKIQLSRSDVWTKDVINYLQALLDEFLSKNVSHSACHGRERSPQIPGPLQNKSDPLLSVTDGEGPSLHFRWWYIVRLLQWHHAEGLLHPSLVIDWVFTQLQEKDLLEVWQLLLPIIYGFLETIVLSQTYVRTLAGLALRVVRDPAPGGSDLVDNSRRAYTTCAVIEMLQYLILVVPDTFVALDCFPLPSSVISHAMNDGNFVLKSTEAAGKVKNSSDDFGRIISRIQKHTEDLAKASIPGSPGHCLAKVAKALDKAVVLGDLHVAYKFLFDDLCGGTVSEGWVAKVSPCLRLSLKWFGTVNTPLIYSVFFLCEWATCDFRDFRGSPPHDIKFTGRKDLSQVHIAVRLLKMKIKDVKISLKQTNEYHRASHFAKNSGRRPNSNYVGKVSRLKSSSKSTGSSVIFESPGPLHDIIVCWIDQHVVHKGEGSKRLQLFMVELIRAGIFYPLAYVRQLIVSGIMDANVNLVDMERRRRHYRILKQLPGCFIHDVLEESGIVDGVHLKEALQIYLNERRLILRSPLSESHDDASGTDLPLLKRKKYPASIKDEVSGITIDQRNVISTTKNVKDNAKIEELRTAISVLLQLPNCSSNLSATGCDESEGTVRRSIGSQNSKIDPVEGTPGCEECSRTKRQKLSEERNSFVQGHSPVQSDDDDVWWVKKGMKSPEPLKVDQPQKLTKQVTKSRQKNVRKTQSLAQLAASRIEGSQGASTSHVCGSKVNCPHHKTTMDVDGQRSVDIIPTSHFGDIVSIGKALKQLRFVEKRAIAIWLLSVVRQVIEETDKNIGKVGQFGRPFSVADDRSSIRWKLGEDELSVILYLMDISHDLVSAVKFLLWLLPRLLNSPNSTIHSGRNVLMPARNAENQVCDVGEAFLLSSLRRYENILVAADLIPEALSSAMHRAATIVASNGRVSGSGVLAFARYLLRKYGNVASVIEWEKTFKATCDTRLSSELDSCRSVDGELGLPLGVPAGVEDPDDFFRQKISGGRLPSRVGAGMREVVQHKVEEAFRFLFGKDRKLFAAGTLKGLPPVEKWDNGYQIAQQIVMGLIDCIRQTGGAAQEGDPSLVSSAVSAIVGSVGPTLAKIPDFSSGSNHSNITSASNLLNDARCILRMHITCLGLLKEALGERQSRVFDIALATEASTALAGVFTPSKASRSQFQTFPEVHDSSNTISNDMGSNSNKVVVAKTTKIAAAVSALFVGAIIYGVTSLERMVTVLRLKEGLDAVQFVRSTRSTSNGNARSVMAFKMDSSIEVHVHWFRLLVGNCRTICEGLVVELLGEPFIMALSRMQRMLPLNLVFPPAYSIFAFIRWRPFILNATVREDMNQIYQSLIVAITEAIKHLPFRDVCFRDCQGLYDLMSADNSDSDFANLLEFNGSDMHLKLTAFVPLRSRLFLNAIIDCKMPQSIYAKDDGSRISGPGESKVKPTDSGSKLQDMLVHILDTLQPAKFHWQWVLLRLLLNEQALIEKVENHDVPLADAIKLSSPSPEKAASASENENNFIQILLTRLLVRPDAAPLFAELIHLFGRSLEDSMLLQAKWFLGGQDVLFGRKAIRQRLHNIAVNKKLSVKTQFWEPWGWCSPTTDSLTIKGDNKKFDSTSLEEGEVVEEGTYLKRCQQQVIERALIELLLPCIDQSSDEARNSFATDLVKQLNYIETHITAITGGSKPVGSAPAGVEGQPNKVNNRKNLRTGSAALSRRPTVATDSSPPSPAALRVSMSLRLQLLLRFLPTLCTDREPSVRSTRQFLASVIFRLLGSRVVHQDADISANAVPLPTREAESSSEVASAAFVDSSSQSLFDRLLLVLHGLLSSYPPSWLRPKPSKTNNEPTIDRELLETLQNELDRMQLPDTVRWRIQAAMPVLIPSMRCSLSCQPPSVSNSALMCIQPGTANPGVNPSSSTIPQRGPALSRVASNVSGKPKRQDNDLEIDPWTLLEDGAGSIPLAGNTASLGSGDHVNIRAASWLKGAVRVRRTDLTYVGAVDDDS
Length2219
PositionKinase
OrganismPhaseolus angularis (Azuki bean) (Vigna angularis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.06
Grand average of hydropathy-0.205
Instability index49.80
Isoelectric point8.93
Molecular weight245229.90
Publications
PubMed=26460024

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04816
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     233.59|     109|     358|     825|     954|       1
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  825-  906 (78.08/80.89)	.................................................................................................................................................................................................................................................................................CSSNLSA..TGCDESEGTVRRsigsqnskidPVeGTP.GCEECSRTKRQKLS....................EERNSFVQGHspvqsddDDVWWVKKGMKSPEPL
  907-  954 (38.27/20.18)	KVDQPQKLTKQVTKSRQKNVRKTQSLAQLAASRIEGSqgaSTSHVCGS..........................................................................................................................................................................................................................................................................................................................................
 1180- 1266 (70.46/39.32)	................................................kvncphhkttmdvdgqrsvdiiptshfgdivsigkalkqlrfvekraiaiwllsvvrqvieetdknigkvgqfgrpfsvaddrssirwklgedelsvilylmdishdlvsavkfllwllprllnspnstihsgrnvlmparnaenqvcdvgeafllsslrryenilvaadlipealssamhraativasngrvsgsgvlafaryllrkygnvasviewektfkatCDTRLSSelDSCRSVDGELGL..........PL.GVPaGVEDPDDFFRQKISggrlpsrvgagmrevvqhkvEEAFRFLFGK.......DRKLFAAGTLKGLPPV
 1268- 1312 (46.79/18.64)	KWDNGYQIAQQIVMGLIDCIRQTGGAAQEGDPSLVSS...AVSAIVGS..........................................................................................................................................................................................................................................................................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.59|      41|     503|    1444|    1490|       2
---------------------------------------------------------------------------
 1444- 1490 (55.97/45.16)	SLeRMVTVLRLKEGL..DAVQFVRSTRSTsngnARSVMaFKMDSSIEVH
 1953- 1995 (65.62/35.18)	SL.RLQLLLRFLPTLctDREPSVRSTRQF....LASVI.FRLLGSRVVH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.39|      51|     358|     270|     327|       3
---------------------------------------------------------------------------
  270-  327 (76.66/70.43)	SHSACHGRERSPQIPGPLQN....KSDPLLsVTDGEGpSLHFRwWYIVRLLQwhhaEGLLHP
  630-  684 (86.72/51.75)	SSSKSTGSSVIFESPGPLHDiivcWIDQHV.VHKGEG.SKRLQ.LFMVELIR....AGIFYP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.52|      22|     503|    1649|    1670|       4
---------------------------------------------------------------------------
 1649- 1670 (39.83/22.11)	SRI..SGPGESKVKPTDSGS.KLQD
 2133- 2157 (28.69/13.75)	STIpqRGPALSRVASNVSGKpKRQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.10|      26|     364|       3|      28|       5
---------------------------------------------------------------------------
    3-   28 (47.63/31.84)	RYHAGSCTSAVNNSAIGGPSTRDTGR
  369-  394 (44.46/29.13)	RTLAGLALRVVRDPAPGGSDLVDNSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.09|      38|     858|    1315|    1354|      12
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 1315- 1354 (58.76/50.14)	PTLAKIPDFSSGsNHSNITSASNLLNDARcILRMHITCLG
 2176- 2213 (66.33/45.24)	PLAGNTASLGSG.DHVNIRAASWLKGAVR.VRRTDLTYVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.45|      27|    1664|     105|     132|      14
---------------------------------------------------------------------------
  105-  132 (44.10/32.70)	LTQVPHF..NKNvVLDCKEAIRKRLR..AINE
 1769- 1799 (39.35/24.12)	LLQAKWFlgGQD.VLFGRKAIRQRLHniAVNK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04816 with Med12 domain of Kingdom Viridiplantae
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