<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04803

Description Uncharacterized protein
SequenceMKTRNPPSKAILNSQKVHPETHKLTENMVADSKTDSVSSLVRAVLVKAWRERWNEIRWGVCLKRVLASYPEENCDLAEILLQQALVGTSPNTLVMSYLRHAISSQLITHNVAYRNITKFEDFNRPYCILGLVELVESVTVKFSFACTADSPLVLSRSLQKLLHWLLLCILKSLQRLAEGRQTQEHITIIDRTCTAIQKIMQGGPIWALLYIARSEDNETYREFEQTEVNVRGTVTQLQQNVISIQQREKVIETLLVLGGQEMQNSSDKAVLEVSHLTVCPTVNALVALEAVLNPTNDVQPFLEQLLVIEKLAKLNRAKLYCELMRACFMGLIDSNGGQEELKWAAFTFLKLPQVLLRIQRQSPGQDFSHELELGFDRLLSYVPLLDVTDLRLNCDCVTFLLKECQKYSLLTEIQGSKLQQRRLVSVASKLHLSLTVSLHPPVELGTDVMQPAPLLSSINSETQKPRSSDAVSNTQPSVSLILRAEPTVTSILKTLDADYSKNQEPLLGVLSHMLSGKSFELILAAAAATGKLQSFAIKLVKFNEFARQATGEGGKAANTRALLFDISFLMLCHIAQLYGAEIITSSPDCSESFFAQWSMKCLPEDGKYKCIENSSPSDQHKVDLLLNQFTNGGEHKNSMARWHEICMNAPFAMQEVLFAWEHGALSADNVKNILDCVKKKMCCLPVVVSAWLCSYMNTVGEEARSKPHNMLEQLSRVNPDSQGQYPSENYHERSHLMSIILCKMSNDILPASRRSTAQQYIPPKALPGKVMDQTTQAIFEKGWVDLRSLHALEQLLNLCGSDWFSDRLVAMMLAGNRLEDLSLSLSLSFALCHMDLENISLSLLLHTLPNILSSRHKMHMLVNPRGAMLAKLCVMCIVGAQMAKSNSKDSFHYTKRGRKRPFHEVDWEEPEDENRKNKMRKVHEPQITLDSEGFNLDFITAKEEGEPSPPYDTKDPLNKAVLNLMRMMNSLLHSSIISPRTGFVAALIEEAVRCGRQYSRLILQFMPQGMVTQLLKCLPGSLTNQQILSICDLSTTVGRKVAAKAIYQNAQMKKV
Length1055
PositionTail
OrganismOctopus bimaculoides (California two-spotted octopus)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Cephalopoda> Coleoidea> Octopodiformes> Octopoda> Incirrata> Octopodidae> Octopus.
Aromaticity0.06
Grand average of hydropathy-0.131
Instability index53.17
Isoelectric point7.99
Molecular weight118481.03
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04803
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.84|      28|     258|     455|     482|       1
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  455-  482 (45.03/32.47)	LSSINSETQKPRSSDAVSNTQPSVSLIL
  714-  741 (49.81/36.77)	LSRVNPDSQGQYPSENYHERSHLMSIIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.27|      53|     439|     340|     424|       2
---------------------------------------------------------------------------
  312-  384 (67.27/76.77)	AKLNRAKLYCE....LMRAC..FMGLIDSNGGQeelkwaaftflKLpQVLLRIQRQSPgqdfsheLELGFDrLLSYVPL
  385-  454 (70.99/65.73)	LDVTDLRLNCDcvtfLLKECqkYSLLTEIQGSKlqqrrlvsvasKL.HLSLTVSLHPP.......VELGTD.VMQPAPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.81|      30|     336|     677|     706|       4
---------------------------------------------------------------------------
  677-  706 (55.31/29.95)	VKKKMCCLPVVVSAW....LCSYMNTVGEEARSK
 1011- 1044 (45.50/23.50)	VTQLLKCLPGSLTNQqilsICDLSTTVGRKVAAK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.03|      32|     494|     257|     293|       5
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  257-  293 (41.14/48.27)	LGGQEMQNSSdKAVLEVSHLtvcpTVNALVALEAVLN
  766-  797 (55.88/42.53)	LPGKVMDQTT.QAIFEKGWV....DLRSLHALEQLLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.42|      48|     583|      14|      67|       9
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   14-   67 (68.72/61.47)	SQKVHPE..THKLTENmVADSKTDSVSSLVRAvLV.....KAWRERWNEIrwgvCLKRVLA
  598-  652 (79.70/49.67)	SMKCLPEdgKYKCIEN.SSPSDQHKVDLLLNQ.FTnggehKNSMARWHEI....CMNAPFA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04803 with Med24 domain of Kingdom Metazoa
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