<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04802

Description Uncharacterized protein (Fragment)
SequenceFFIGILEWPDMPKQGSNATKVTRSLQCNMTVSAGEQDINASNWPNKLIMQLIPIDFLNHFSEYFVNAKTVNFHFTNTDIEAMRSLCRILGNSLAGCVHIPGVHQCELRVVMLIYSKKKKSFVGLLPSDQAAFITGIRRVIAEHKKQKGIQFGQMVMSVPQVMPAANQMVTQSNVPQPLTAISVQNMAPTSMGVVTTQMPGGMSLVTGQVQPQMSMDQGQTNMAKLQQAVKAKEMQAMGNEPPAKRQQVMDVRQPLLDGFYNAGMHSLPHFYSGLWQVRHQQQQQQQQQQNRMPLPTSQTTFSQQQLRHLLQQQQQQQQQQQQQQQQQQQHQPNQPAAQQATTTQQQHHHMRQNHLQMLQQQQQQQQQQQQQQQQQQQQQQQHRVPVSQSHNVTMGSAPGQQMPGPPGMAPPPSGMPQTAATKCLFNKNKSQKPRNQIYERNNEI
Length444
PositionUnknown
OrganismOctopus bimaculoides (California two-spotted octopus)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Cephalopoda> Coleoidea> Octopodiformes> Octopoda> Incirrata> Octopodidae> Octopus.
Aromaticity0.05
Grand average of hydropathy-0.793
Instability index74.36
Isoelectric point9.89
Molecular weight50376.77
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04802
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     114.22|      12|      38|     280|     291|       1
---------------------------------------------------------------------------
  280-  291 (28.81/ 6.94)	QQQQQQQQQQNR
  311-  322 (28.52/ 6.80)	QQQQQQQQQQQQ
  360-  371 (28.52/ 6.80)	QQQQQQQQQQQQ
  372-  383 (28.39/ 6.74)	QQQQQQQQQQHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     154.35|      32|      33|     185|     216|       2
---------------------------------------------------------------------------
  158-  180 (28.16/ 9.07)	.........VPQVMPAANQMVTQ..SNVP...QPLTA
  185-  216 (57.05/25.57)	NMAPTSMGVVTTQMPGGMSLVTG..QVQP...QMSMD
  221-  250 (39.21/15.38)	NMAKLQQAVKAKEMQA.M....G..NEPPakrQQVMD
  251-  278 (29.93/10.07)	VRQPLLDGFYNAGMHSLPHFYSGlwQVR.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.11|      13|      15|     326|     338|       3
---------------------------------------------------------------------------
  326-  338 (25.40/ 9.20)	QQQQHQPNQPAAQ
  344-  356 (26.71/10.07)	QQQHHHMRQNHLQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04802 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LVTGQVQPQMSMDQGQTNMAKLQQAVKAKEMQAMGNEPPAKRQQVMDVRQPLLDGFYNAG
2) RHQQQQQQQQQQNRMPLPTSQTTFSQQQLRHLLQQQQQQQQQQQQQQQQQQQHQPNQPAAQQATTTQQQHHHMRQNHLQMLQQQQQQQQQQQQQQQQQQQQQQQHRVPVSQSHNVTMGSAPGQQMPGPPGMAPPPSGMPQTAATKCLFNKNKSQKPRNQIYERNNEI
204
278
263
444










Molecular Recognition Features






MoRF SequenceStartStop




1) TAATKCLFNKNKS
418
430