<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04796

Description Uncharacterized protein
SequenceMKTRNPPSKAILNSQKVHPETHKLTENMVADSKTDSVSSLVRAVLVKAWRERWNEIRWGVCLKRVLASYPEENCDLAEILLQQALVGTSPNTLVMSYLRHAISSQLITHNVAYRNITKFEDFNRPYCILGLVELVESVTVKFSFACTADSPLVLSRSLQKLLHWLLLCILKSLQRLAEGRQTQEHITIIDRTCTAIQKIMQGGPIWALLYIARSEDNETYREFEQTEVNVRGTVTQLQQNVISIQQREKVIETLLVLGGQEMQNSSDKAVLEVSHLTVCPTVNALVALEAVLNPTNDVQPFLEQLLVIEKLAKLNRAKLYCELMRACFMGLIDSNGGQEELKWAAFTFLKLPQVLLRIQRQSPGQDFSHELELGFDRLLSYVPLLDVTDLRLNCDCVTFLLKECQKYSLLTEIQGSKLQQRRNSETQKPRSSDAVSNTQPSVSLILRAEPTVTSILKTLDADYSKNQEPLLGVLSHMLSGKSFELILAAAAATGKLQSFAIKLVKFNEFARQATGEGGKAANTRALLFDISFLMLCHIAQLYGAEIITSSPDCSESFFAQWSMKCLPEDGKYKCIENSSPSDQHKVDLLLNQFTNGGEHKNSMARWHEICMNAPFAMQEVLFAWEHGALSADNVKNILDCVKKKMCCLPVVVSAWLCSYMNTVGEEARSKPHNMLEQLSRVNPDSQGQYPSENYHERSHLMSIILCKMSNDILPASRRSTAQQYIPPKALPGKVMDQTTQAIFEKGWVDLRSLHALEQLLNLCGSDWFSDRLVAMMLAGNRLEDLSLSLSLSFALCHMDLENISLSLLLHTLPNILSSRHKMHMLVNPRGAMLAKLCVMCIVGAQMAKSNSKDSFHYTKRGRKRPFHEVDWEEPEDENRKNKMRKVHEPQITLDSEGFNLDFITAKEEGEPSPPYDTKDPLNKAVLNLMRMMNSLLHSSIISPRTGFVAALIEEAVRCGRQYSRLILQFMPQGMVTQLLKCLPGSLTNQQILSICDLSTTVGRKVAAKAIYQNAQMKKV
Length1019
PositionTail
OrganismOctopus bimaculoides (California two-spotted octopus)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Cephalopoda> Coleoidea> Octopodiformes> Octopoda> Incirrata> Octopodidae> Octopus.
Aromaticity0.06
Grand average of hydropathy-0.163
Instability index53.95
Isoelectric point8.10
Molecular weight114748.64
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04796
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     753.27|     240|     258|     182|     437|       1
---------------------------------------------------------------------------
  182-  333 (179.14/116.37)	..................................................................................................................TQEHITIID....................R...TCTAIQKIMQGG......PIWALLyIARSEDNETYREFEQTEVNVRGTVTQLQQNVISIQQREKVIETL..LVLGGQEMQNSSDKAVL.EVSHLTVCPtVNALVALEAVLNPTNDVQPFLEQlLVIEKLAKLNRAKlyC.ELMRACFMGLID
  334-  587 (340.17/224.51)	SNGGQEE...LKWAAFTfLKLPQVLLRIQrqspgqdFSHEL.ELGFDRLLSyvpLLDVTDLRLNCDCVTFLLKECQKYSLLTEIQGSK....LQQ..RRNSETQKPRSSDAVSNTQPSVSLIL....................RaepTVTSILKTLDADysknqePLLGVL.....SHMLSGKSFELILAAAAAT.GKLQSFAIKLVKFNEFARQA..TGEGG...KAANTRALLfDISFLMLCH.IAQLYGAEIITSSPDCSESFFAQ.WSMKCLPEDGKYK..CiENSSPSDQHKVD
  594-  796 (233.96/134.51)	TNGGEHKnsmARWHEIC.MNAPFAMQEVL.......FAWEHgALSADNVKN...ILDCVKKKMCCLPVVVSAWLCSYMNTVGEEARSKphnmLEQlsRVNPDSQGQYPSENYHE.........rshlmsiilckmsndilpasR...RSTAQQYI..........PPKAL..PGKVMDQTTQAIFEKGWVDLR.SLHALEQ.LLNLCGSDWFSDRLvaMMLAGNRLEDLS..LSL.SLS.FALC.......................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.77|      24|     811|     150|     173|       2
---------------------------------------------------------------------------
  150-  173 (41.33/24.77)	SPLVLSRSLQKLLHWLLLCILKSL
  963-  986 (43.44/26.41)	SRLILQFMPQGMVTQLLKCLPGSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04796 with Med24 domain of Kingdom Metazoa
Unable to open file!