<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04795

Description Uncharacterized protein
SequenceMKKETHKLTENMVADSKTDSVSSLVRAVLVKAWRERWNEIRWGVCLKRVLASYPEENCDLAEILLQQALVGTSPNTLVMSYLRHAISSQLITHNVAYRNITKFEDFNRPYCILGLVELVESVTVKFSFACTADSPLVLSRSLQKLLHWLLLCILKSLQRLAEGRQTQEHITIIDRTCTAIQKIMQGGPIWALLYIARSEDNETYREFEQTEVNVRGTVTQLQQNVISIQQREKVIETLLVLGGQEMQNSSDKAVLEVSHLTVCPTVNALVALEAVLNPTNDVQPFLEQLLVIEKLAKLNRAKLYCELMRACFMGLIDSNGGQEELKWAAFTFLKLPQVLLRIQRQSPGQDFSHELELGFDRLLSYVPLLDVTDLRLNCDCVTFLLKECQKYSLLTEIQGSKLQQRRLVSVASKLHLSLTVSLHPPVELGTDVMQPAPLLSSINSETQKPRSSDAVSNTQPSVSLILRAEPTVTSILKTLDADYSKNQEPLLGVLSHMLSGKSFELILAAAAATGKLQSFAIKLVKFNEFARQATGEGGKAANTRALLFDISFLMLCHIAQLYGAEIITSSPDCSESFFAQWSMKCLPEDGKYKCIENSSPSDQHKVDLLLNQFTNGGEHKNSMARWHEICMNAPFAMQEVLFAWEHGALSADNVKNILDCVKKKMCCLPVVVSAWLCSYMNTVGEEARSKPHNMLEQLSRVNPDSQGQYPSENYHERSHLMSIILCKMSNDILPASRRSTAQQYIPPKALPGKVMDQTTQAIFEKGWVDLRSLHALEQLLNLCGSDWFSDRLVAMMLAGNRLEDLSLSLSLSFALCHMDLENISLSLLLHTLPNILSSRHKMHMLVNPRGAMLAKLCVMCIVGAQMAKSNSKDSFHYTKRGRKRPFHEVDWEEPEDENRKNKMRKVHEPQITLDSEGFNLDFITAKEEGEPSPPYDTKDPLNKAVLNLMRMMNSLLHSSIISPRTGFVAALIEEAVRCGRQYSRLILQFMPQGMVTQLLKCLPGSLTNQQILSICDLSTTVGRKVAAKAIYQNAQMKKV
Length1039
PositionTail
OrganismOctopus bimaculoides (California two-spotted octopus)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Cephalopoda> Coleoidea> Octopodiformes> Octopoda> Incirrata> Octopodidae> Octopus.
Aromaticity0.06
Grand average of hydropathy-0.119
Instability index52.94
Isoelectric point7.69
Molecular weight116740.07
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04795
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.84|      28|     258|     439|     466|       1
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  439-  466 (45.03/35.88)	LSSINSETQKPRSSDAVSNTQPSVSLIL
  698-  725 (49.81/40.65)	LSRVNPDSQGQYPSENYHERSHLMSIIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.27|      53|     439|     324|     408|       2
---------------------------------------------------------------------------
  296-  368 (67.27/71.45)	AKLNRAKLYCE....LMRAC..FMGLIDSNGGQeelkwaaftflKLpQVLLRIQRQSPgqdfsheLELGFDrLLSYVPL
  369-  438 (70.99/61.17)	LDVTDLRLNCDcvtfLLKECqkYSLLTEIQGSKlqqrrlvsvasKL.HLSLTVSLHPP.......VELGTD.VMQPAPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.81|      30|     336|     661|     690|       4
---------------------------------------------------------------------------
  661-  690 (55.31/37.93)	VKKKMCCLPVVVSAW....LCSYMNTVGEEARSK
  995- 1028 (45.50/29.78)	VTQLLKCLPGSLTNQqilsICDLSTTVGRKVAAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.03|      32|     494|     241|     277|       5
---------------------------------------------------------------------------
  241-  277 (41.14/41.33)	LGGQEMQNSSdKAVLEVSHLtvcpTVNALVALEAVLN
  750-  781 (55.88/36.40)	LPGKVMDQTT.QAIFEKGWV....DLRSLHALEQLLN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04795 with Med24 domain of Kingdom Metazoa
Unable to open file!