<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04793

Description Uncharacterized protein (Fragment)
SequenceFFIGILEWPDMPKQGSNATKVTRSLQCNMTVSAGEQDINASNWPNKLIMQLIPIDFLNHFSEYFVNAKTVNFHFTNTDIEAMRSLCRILGNSLAGCVHIPGVHQCELRVVMLIYSKKKKSFVGLLPSDQAAFITGIRRVIAEHKKQKGIQFGQMVMSVPQVMPAANQMVTQSNVPQPLTAISVQNMAPTSMGVVTTQMPGGMSLVTGQVQPQMSMDQGQTNMAKLQQAVKAKEMQAMGNEPPAKRQQVMDVRQPLLVRHQQQQQQQQQQNRMPLPTSQTTFSQQQLRHLLQQQQQQQQQQQQQQQQQQQQQHRVPVSQSHNVTMGSAPGQQMPGPPGMAPPPSGMPQTAATKCLFNKNKSQKPRNQIYERNNEI
Length374
PositionUnknown
OrganismOctopus bimaculoides (California two-spotted octopus)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Cephalopoda> Coleoidea> Octopodiformes> Octopoda> Incirrata> Octopodidae> Octopus.
Aromaticity0.05
Grand average of hydropathy-0.597
Instability index67.42
Isoelectric point9.95
Molecular weight41953.81
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04793
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     147.98|      32|      32|     239|     270|       1
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  196-  236 (40.55/12.21)	TQMPGgmslvtgqvQPQMSMDQGQTNMAKL..QQAVKAKEMQA
  239-  270 (62.14/22.18)	NEPPA.........KRQQVMDVRQPLLVRH..QQQQQQQQQQN
  273-  301 (45.29/14.40)	PLPTS............QTTFSQQQL..RHllQQQQQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.92|      14|      23|     156|     170|       2
---------------------------------------------------------------------------
  157-  170 (25.67/14.22)	SVPQVMPAANQMVT
  182-  195 (23.25/ 7.36)	SVQNMAPTSMGVVT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04793 with Med25 domain of Kingdom Metazoa
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