<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04790

Description Uncharacterized protein (Fragment)
SequenceFFIGILEWPDMPKQGSNATKVTRSLQCNMTVSAGEQDINASNWPNKLIMQLIPIDFLNHFSEYFVNAKTVNFHFTNTDIEAMRSLCRILGNSLAGCVHIPGVHQCELRVVMLIYSKKKKSFVGLLPSDQAAFITGIRRVIAEHKKQKGIQFGQMVMSVPQVMPAANQMPGGMSLVTGQVQPQMSMDQGQTNMAKLQQAVKAKEMQAMGNEPPAKRQQVMDVRQPLLDGFYNAGMHSLPHFYSGLWQVRHQQQQQQQQQQNRMPLPTSQTTFSQQQLRHLLQQQQQQQQQQQQQQQQQQQHQPNQPAAQQATTTQQQHHHMRQNHLQMLQQQQQQQQQQQQQQQQQQQQQQQHRVPVSQSHNVTMGSAPGQQMPGPPGMAPPPSGMPQTAATKCLFNKNKSQKPRNQIYERNNEI
Length414
PositionUnknown
OrganismOctopus bimaculoides (California two-spotted octopus)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Cephalopoda> Coleoidea> Octopodiformes> Octopoda> Incirrata> Octopodidae> Octopus.
Aromaticity0.05
Grand average of hydropathy-0.867
Instability index76.58
Isoelectric point9.89
Molecular weight47263.18
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04790
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     255.94|      38|      38|     263|     300|       1
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  125-  169 (42.82/ 7.41)	LPSDQ.........AAFIT...GIRRVIAEHKKQKGIQFGQMVMSVPQVmpaanqmP
  174-  212 (40.78/ 6.76)	LVTGQ.........V...Q...PQM.SMDQGQTNMAKLQQAVKAKEMQA..mgnepP
  213-  263 (47.86/ 9.01)	AKRQQvmdvrqpllDGFYNagmHSLPHFYSGLWQVRHQQQQQQQQQQNR......mP
  264-  302 (67.80/15.33)	LPTSQ.........TTFSQ...QQLRHLLQQQQQQQQQQQQQQQQQQQH......qP
  304-  340 (56.69/11.81)	QPAAQ........qATTTQ...QQHHHMRQNHLQMLQQQQQQQQQQQQ.........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04790 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PGGMSLVTGQVQPQMSMDQGQTNMAKLQQAVKAKEMQAMGNEPPAKRQQVMDVRQPLLDGFYNAG
2) RHQQQQQQQQQQNRMPLPTSQTTFSQQQLRHLLQQQQQQQQQQQQQQQQQQQHQPNQPAAQQATTTQQQHHHMRQNHLQMLQQQQQQQQQQQQQQQQQQQQQQQHRVPVSQSHNVTMGSAPGQQMPGPPGMAPPPSGMPQTAATKCLFNKNKSQKPRNQIYERNNEI
169
248
233
414










Molecular Recognition Features






MoRF SequenceStartStop




1) TAATKCLFNKNKS
388
400