<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04789

Description Uncharacterized protein (Fragment)
SequenceFFIGILEWPDMPKQGSNATKVTRSLQCNMTVSAGEQDINASNWPNKLIMQLIPIDFLNHFSEYFVNAKTVNFHFTNTDIEAMRSLCRILGNSLAGCVHIPGVHQCELRVVMLIYSKKKKSFVGLLPSDQAAFITGIRRVIAEHKKMPGGMSLVTGQVQPQMSMDQGQTNMAKLQQAVKAKEMQAMGNEPPAKRQQVMDVRQPLLDGFYNAGMHSLPHFYSGLWQVRHQQQQQQQQQQNRMPLPTSQTTFSQQQLRHLLQQQQQQQQQQQQQQQQQQQQQHRVPVSQSHNVTMGSAPGQQMPGPPGMAPPPSGMPQTAATKCLFNKNKSQKPRNQIYERNNEI
Length342
PositionUnknown
OrganismOctopus bimaculoides (California two-spotted octopus)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Cephalopoda> Coleoidea> Octopodiformes> Octopoda> Incirrata> Octopodidae> Octopus.
Aromaticity0.06
Grand average of hydropathy-0.694
Instability index71.31
Isoelectric point9.78
Molecular weight38777.94
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04789
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     148.44|      34|      37|     213|     246|       1
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  132-  170 (32.86/ 9.69)	..FITGIRRViaEHKK.......MPGGMslvtgQVQPQMSMDQGQ......TNM
  171-  215 (29.71/ 8.04)	AKLQQAV.KA..KEMQamgneppAKRQQ.....VMDVRQPLLDG.fynagmHSL
  216-  254 (60.05/23.96)	PHFYSGLWQV..RHQQ.......QQQQQ.....QQQNRMPLPTSQ.ttfsqQQL
  270-  295 (25.83/ 6.00)	..............QQ.......QQQQQ.....QQQHRVPVSQSH..nvtmGSA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04789 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SLVTGQVQPQMSMDQGQTNMAKLQQAVKAKEMQAMGNEPPAKRQQVMDVR
2) YSGLWQVRHQQQQQQQQQQNRMPLPTSQTTFSQQQLRHLLQQQQQQQQQQQQQQQQQQQQQHRVPVSQSHNVTMGSAPGQQMPGPPGMAPPPSGMPQTAATKCLFNKNKSQKPRNQIYERNNEI
151
219
200
342










Molecular Recognition Features






MoRF SequenceStartStop




1) TAATKCLFNKNK
316
327