<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04785

Description Uncharacterized protein (Fragment)
SequenceMGCEDEVLKIGKKLEKMISSGTSDHAASVDLLKSLQDLPMTLDVLQKTRIGMTVNNFRKSSNADEVISLSKALIKSWKKLLPGESTNSKSSSSSSQSSARSNSVNKTDESSRDSTDSNSHDVNKKMEGDAKGGQSGTKPNDTSDPIRLKCRELLFNALKVDKFRNTDMKYKNRVRSRVANLKDPKNPQLRESVLQGIIDPCRMAGMTAEEMASDAMKLLRSKLTKEAINEHQIAQTSGSVTDLIKCGKCKKTNCTYNQ
Length258
PositionUnknown
OrganismOctopus bimaculoides (California two-spotted octopus)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Cephalopoda> Coleoidea> Octopodiformes> Octopoda> Incirrata> Octopodidae> Octopus.
Aromaticity0.02
Grand average of hydropathy-0.760
Instability index35.61
Isoelectric point9.40
Molecular weight28395.00
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04785
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.83|      15|      17|      92|     106|       1
---------------------------------------------------------------------------
   92-  106 (24.33/14.49)	SSSSQSSARSNSVNK
  110-  124 (25.50/15.55)	SSRDSTDSNSHDVNK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04785 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PGESTNSKSSSSSSQSSARSNSVNKTDESSRDSTDSNSHDVNKKMEGDAKGGQSGTKPNDTSDPI
2) TDMKYKNRVRSRVANLKDPKNPQLRESVLQG
82
166
146
196










Molecular Recognition Features






MoRF SequenceStartStop




1) CRELLFNALKV
2) VISLSKALIKSWKKLLPGE
150
66
160
84