<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04784

Description Uncharacterized protein (Fragment)
SequenceMSSDATEINFTFRLFGEVEIDKGCWDKDKDKDKDNGLSYECRTLLFKALHNLIERCLLTKNFIRLGKWFVQPYDQNSPSDRSSHLSFCFHFFLHGESSVCASIEIKQHPPVWRLTPQHLTLVQESTSPLQVILAPYGLCGTLTGNTYRDTDQASRSVLDEWSRYYPGEVLDAKDAYNENANKLPSVVEVIIVALGAAAGGGGGGGGGAGVHMRYPSAFIFTCEEEPTLTVPASTLAAAPVPPIQRPSCPHPVIPNGPLTPPTSPGEPQLPPGGGLKLCPSLPYATGPVEPSLGPLDQTADSVAFRILEKVAQDSVTMAGISKRNPDLTSEDMLLIWDFGDPTSKASCNCIRHRNSKSKSLAQNATKSLLPCGSNKHVKGEKPEKFDRQQSRHGRNVIPFHRRSLQHDDLFHFELDMIPPMPPNPAFRPPPNSSSSNTAGGPGGVTPGLPQLHNTVEPCGSAGVDSPSTPAPSPLDSETRNQPLGNQNMDPAMPTLSPHPPPQKSGSDKDIGVSGSVGSSSGSGMSTSGGGGNGGNNNSGVGNSTVSSGGGSGGSGGSKPASIGDSQSVMLYNGNDLYLKSEEPSPKMEATPSPANLQLQHHQQQQQQQQQLQQQQQQQQQQQQQQQQQQQQQQQQQLQQTQQTHPQQLQQQQQQQQQQQQQQQDFKIDSDNNSWLRSQHRHMESKLLKRPHLPTNEIEDEQILVTDSLYDFQSLNS
Length716
PositionMiddle
OrganismOctopus bimaculoides (California two-spotted octopus)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Cephalopoda> Coleoidea> Octopodiformes> Octopoda> Incirrata> Octopodidae> Octopus.
Aromaticity0.05
Grand average of hydropathy-0.758
Instability index71.09
Isoelectric point5.87
Molecular weight77839.38
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04784
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     116.01|      26|      27|     602|     628|       1
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  600-  626 (52.23/23.64)	HHQQQQQQqQQLQQQQQQQQQQQQQQQ
  627-  647 (36.69/12.43)	QQQQQQQQ.QQLQQTQQTHPQQ.....
  648-  663 (27.08/ 7.28)	...........LQQQQQQQQQQQQQQQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.71|      23|      27|     505|     531|       2
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  505-  521 (23.91/ 6.55)	...........GSDKD..IGVSGSVGSSSG
  522-  548 (28.26/20.46)	SGmstSgGGGnGGNNN..SGVGNS.TVSSG
  549-  568 (23.54/ 7.29)	GG...S.GGS.GGSKPasIGDSQSV.....
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     309.23|      80|     155|     240|     332|       3
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  240-  289 (73.46/28.92)	.....................................................VPPIQRPSCP...HPVIPNGPLTPPTSPGEPQLPPGGGlKLCPSLPYATGPVE
  290-  382 (94.36/53.07)	PSLGPLD..QTADSVAF..RILEKvaqdsvtmagisKRNPDLTSEDMlliwdfGDPTSKASCNcirHR...NSKSKSLAQNATKSLLP......CGSNKHVKGEKP
  383-  456 (101.36/41.98)	EKFDRQQsrHGRNVIPFhrRSLQH...........................ddLFHFELDMIP....PMPPNPAFRPPPNSSSSNTAGGPG.GVTPGLPQLHNTVE
  469-  501 (40.05/11.88)	PAPSPLD...............SE............TRNQPLGNQNM....dpAMPTL...SP...HP........PP............................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04784 with Med13 domain of Kingdom Metazoa
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