<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04779

Description Uncharacterized protein
SequenceMDRSAGMKNIHDTVCGLQFPQGHNLQGSQRVAPMSECLMFHGAISGKHFPQEHSMQSQRVPYITTDTVFPTNIYSGKQMFTSQPCYLPATTLTSVDRSEDDRSVHNTGTGSSGGGGDHNQSTTSASPPLPSSKHHQQQPQQQVQQQQHHHHQQQQQHHHHHSQQQQQNQLHKSAASNSDKSGSSYQSCCSNANCCQQRKSSQQMQPQTACKTPSPMNHQTHQHQQQQQQQQQLHNQPRQQQQQQQQQQQQQQQQQAVKPRQKQLFCDFCGKEFAQEYLMQMHRRTHTGERPFQCEICLKQFARRDTLRIHLRTHTGEKPFQCDVCFKQFAQKEYLVVHKRSHTGEKPFQCDFCIQKFARRDTLQIHRRMHTGEKPFQCTYCTKQFTQQSKLQVHKRTHVRRKRFHCDICLKLFARKSYLATHKRCHTGEKPFGCDICLKHFSQRDYLQIHRRIHTGDRPYKCEVCFKQFVRQDTLKIHHRTHTREKPYGCDICLKNFAHRHYLAIHRRSHTGERPYQCEFCLLQFARRDKLLVHRRSHTGEKPFQCNNCDLKFASPDELRHHKKSHGPTTVSMDSGSFNSANVNHQHHHHHHHIHQHQQPQQQQQQQQQHIS
Length612
PositionTail
OrganismOctopus bimaculoides (California two-spotted octopus)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Cephalopoda> Coleoidea> Octopodiformes> Octopoda> Incirrata> Octopodidae> Octopus.
Aromaticity0.07
Grand average of hydropathy-1.222
Instability index74.01
Isoelectric point9.56
Molecular weight71936.77
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04779
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            11|     555.72|      26|      26|     342|     367|       1
---------------------------------------------------------------------------
  258-  283 (30.11/ 9.88)	....KPRQkqlfCDFCGKEFAQEYLMQMHR
  286-  311 (55.36/23.09)	HTGERPFQ....CEICLKQFARRDTLRIHL
  314-  339 (54.78/22.78)	HTGEKPFQ....CDVCFKQFAQKEYLVVHK
  342-  367 (55.94/23.39)	HTGEKPFQ....CDFCIQKFARRDTLQIHR
  370-  395 (52.74/21.72)	HTGEKPFQ....CTYCTKQFTQQSKLQVHK
  398-  423 (43.88/17.08)	HVRRKRFH....CDICLKLFARKSYLATHK
  426-  451 (58.58/24.77)	HTGEKPFG....CDICLKHFSQRDYLQIHR
  454-  479 (48.56/19.53)	HTGDRPYK....CEVCFKQFVRQDTLKIHH
  482-  507 (53.70/22.22)	HTREKPYG....CDICLKNFAHRHYLAIHR
  510-  535 (53.02/21.86)	HTGERPYQ....CEFCLLQFARRDKLLVHR
  538-  563 (49.06/19.80)	HTGEKPFQ....CNNCDLKFASPDELRHHK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     235.19|      55|     437|     118|     173|       3
---------------------------------------------------------------------------
  118-  173 (104.79/29.48)	HNQSTTSASPPLPSSKHHQQ.QPQQQVQQQQ...................HHHHQQQQQHHHHHSQQQQQNQlHKS
  184-  255 (80.24/19.05)	SYQSCCSNANCCQQRKSSQQmQPQTACKTPSpmnhqthqhqqqqqqqqqlHNQPRQQQQQQQQQQQQQQQQQ....
  583-  612 (50.16/ 9.03)	..........................VNHQH...................HHHHHHIHQHQQPQQQQQQQQQ.HIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     125.06|      27|      27|       5|      31|       4
---------------------------------------------------------------------------
    3-   29 (52.22/26.84)	RSAGMKN...IH.....DTVCGLQFPQGHNLQGSQ
   30-   58 (44.13/21.65)	RVAPMSEclmFH.....GAISGKHFPQEHSMQ.SQ
   59-   83 (28.71/11.76)	RV..........pyittDTVFPTNIYSGKQMFTSQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04779 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CYLPATTLTSVDRSEDDRSVHNTGTGSSGGGGDHNQSTTSASPPLPSSKHHQQQPQQQVQQQQHHHHQQQQQHHHHHSQQQQQNQLHKSAASNSDKSGS
2) DELRHHKKSHGPTTVSMDSGSFNSANVNHQHHHHHHHIHQHQQPQQQQQQQQQHIS
3) SSQQMQPQTACKTPSPMNHQTHQHQQQQQQQQQLHNQPRQQQQQQQQQQQQQQQQ
85
557
200
183
612
254










Molecular Recognition Features






MoRF SequenceStartStop




NANANA