<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04771

Description Uncharacterized protein
SequenceMSFSSDEVNFLVYRYLQESGFIHSAYTFGIESHISQSNINGALVPPGALLNIIQKGLQYTEAEISIGEDGSERGIESLPLIDAVMPDVVESRKQAAAKAHQIKTENANTNGEDASHSLVNHTDTMDIDGTLEIPSSKATVLRGHESEVFICAWNPTNDLLASGSGDSTARIWNMNDNSNNANQLVLRHCIQKGGTEVPSNKDVTSLDWNCDGTLLATGSYDGFARIWSTDGQLVNTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDASSGHCTQQFAFHSAPALDVDWQSNTSFASCSTDQCIHVCKLGVEKPIKTFQGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSMRQDQCVHDLQAHDKEIYTIKWSPTGQGTNNPNAPLILASASFDSTVRLWDVEQGSCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNVQSGLLVHSYRGTGGIFEVCWNYRGDKVGASASDGSVFVLDLRK
Length489
PositionTail
OrganismOctopus bimaculoides (California two-spotted octopus)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Cephalopoda> Coleoidea> Octopodiformes> Octopoda> Incirrata> Octopodidae> Octopus.
Aromaticity0.08
Grand average of hydropathy-0.307
Instability index37.03
Isoelectric point5.32
Molecular weight53476.98
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04771
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     225.81|      25|      39|     226|     250|       1
---------------------------------------------------------------------------
  156-  173 (16.40/ 6.29)	.....TN.DLLASGSGDSTARI....WN
  226-  250 (44.18/31.19)	IW.S.TD.GQLVNTLGQHKGPIFALKWN
  267-  292 (30.19/18.65)	IWdA.SS.GHCTQQFAFHSAPALDVDWQ
  309-  333 (31.65/19.96)	CK.L.GV.EKPIKTFQGHTNEVNAIKWD
  350-  375 (37.09/24.83)	IW.SmRQ.DQCVHDLQAHDKEIYTIKWS
  401-  426 (30.94/19.32)	LW.D.VEqGSCIHTLTKHQEPVYSVAFS
  443-  467 (35.37/23.29)	IW.N.VQsGLLVHSY.RGTGGIFEVCWN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      58.88|      11|      41|     390|     400|       3
---------------------------------------------------------------------------
  298-  307 (16.94/ 7.98)	.ASCSTDQCIH
  390-  400 (19.32/10.04)	LASASFDSTVR
  432-  442 (22.62/12.89)	LASGSFDKCVH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04771 with Med16 domain of Kingdom Metazoa
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