<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04769

Description Uncharacterized protein (Fragment)
SequenceMLLKYFKNILAPQDGAAKICAVCWSANNVKCAVCTSDRVVLLYDEAGEKRDKFSLKPADPKFGKTSYTVKGLCFSPDSTKIAIGQTDNIIYVYKIGTQWGDKKVICNKFVLQSSVTAMVWPNNQALIFGQVDGKVRAANMKSNKSSTIYATNSYIVSLAASPSGKAFISGHADCSIVRYTFEDDGSGETRGLLCHHSSAPYALAYTSHGIIVGGCDKKIVAYDRDGHCSQQFDFSREEDENEFTCAVCSPSGFSVIFGSFNRLKILNWNPRKGLWEDPINKIIPNLYTITALSWKPDGSRVLVGTLCGSVEVFNSTLKKINYKKKFEIVHVGLNQYGYEIDNVRIMGSDRYAVANSTQTIILADLLTNKFTEIPWQSTGENEKFYFDNENVIIYIASSHLFFFYHLLPRTPAWPPPPLSDSSVRLNERQTKRCHTGDNKRLAYLLDMKTVVIVDLVTENAIAEVEHDSKVDWLELNETGRYLLFRDKKLKLNLYFIEAQQRVTILNSCLYVQWVPGSDVVVAQNRGNLCIWYNIEAYEKVTMIPLKVG
Length548
PositionTail
OrganismOctopus bimaculoides (California two-spotted octopus)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Cephalopoda> Coleoidea> Octopodiformes> Octopoda> Incirrata> Octopodidae> Octopus.
Aromaticity0.11
Grand average of hydropathy-0.169
Instability index29.52
Isoelectric point8.42
Molecular weight61614.83
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04769
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     241.80|      43|      43|     143|     185|       1
---------------------------------------------------------------------------
   62-   97 (43.14/21.97)	...........FGKTSYTV.kGLCF..SPDSTKIAIGQTD.NII.YVYKIGT
   98-  133 (40.74/20.38)	QWG.....DKKVICNKFVLqsSVTAmvWPNNQALIFGQV...........DG
  143-  185 (72.37/41.25)	NKS.....STIYATNSYIV..SLAA..SPSGKAFISGHADCSIVRYTFEDDG
  195-  226 (55.32/30.00)	HHS.....SAPYA.........LAY..TSHG..IIVGGCDKKIVAY..DRDG
  227-  258 (30.23/13.45)	HCSqqfdfSREEDENEFTC..AV.C..SPSGFSVIFG...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.29|      15|      36|     491|     505|       2
---------------------------------------------------------------------------
  491-  505 (25.65/18.78)	LNLYF.IEAQQRVTIL
  528-  543 (24.64/17.76)	LCIWYnIEAYEKVTMI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04769 with Med16 domain of Kingdom Metazoa
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