<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04768

Description Uncharacterized protein
SequenceMAGNHSYGGSQGSNIYLNTGMSASGQAPPMAGSALVPPLSQQQMHGQAGQTAQQQNTQQSNMLPQSSGGMLSQGGSSQLPSNVPGSQQGGQLPKEVNSVSLCRLGQEIVHDTVQRAADIFGILKTISLPNGASYNVQQYQEKKNKLDDQMRILNLGFRKLRIISEKVEESTGPREAMFSSENLIPICNKEYNTEFLRDAEKNNLYQIVSEEHRDMVERIQLKSRQLKEVIDHIRTIIWEINTMITMRKTG
Length250
PositionHead
OrganismOctopus bimaculoides (California two-spotted octopus)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Cephalopoda> Coleoidea> Octopodiformes> Octopoda> Incirrata> Octopodidae> Octopus.
Aromaticity0.04
Grand average of hydropathy-0.609
Instability index49.45
Isoelectric point7.79
Molecular weight27645.90
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04768
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.54|      26|      26|      40|      65|       1
---------------------------------------------------------------------------
   40-   65 (47.28/22.24)	SQQQMHGQAGQTAQQQN...TQQSNMLPQ
   66-   94 (39.27/17.39)	SSGGMLSQGGSSQLPSNvpgSQQGGQLPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.50|      16|      20|     174|     191|       2
---------------------------------------------------------------------------
  174-  191 (23.82/24.95)	REAmfSSENLIPICNKEY
  197-  212 (27.68/19.74)	RDA..EKNNLYQIVSEEH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04768 with Med30 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QAPPMAGSALVPPLSQQQMHGQAGQTAQQQNTQQSNMLPQSSGGMLSQGGSSQLPSNVPGSQQGGQL
26
92










Molecular Recognition Features






MoRF SequenceStartStop




NANANA