<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04753

Description Uncharacterized protein
SequenceMSQTTGDMERKVSKIITDIMKEETIDAFCSTMIHTDDSKKMKKEHFEKLKKIWCSCPQENPEARESFLRYFVQCIHKQHNSKRSQTLFDLLEMLVENNVVPSRPICEALLTSENLHYKQKDQWIQTFALIRKIIGGVDYKGCRDLLRVILEKCQTIPACENVSCGAQVDCAVEVVSAIIDRNSCLLPSYLAIFEISKLCADDKKWPHWKLGQVLAEFNQSFRLTAHMVSIAGRQHLLPVVGYSTSNHVWRLNAGNLRFALSGALPYDKDMLEPQKGLLCYVLEQPYSREMVCNMLGVTKQVKQRCEVLEEQLVDLVVIAMERSEKEDADKDESEFGQLLWQHLGSQLIFFVLFQFVSFPHMVMSLYEKLKDRNLKQGRDHLMWILLQFISGSVQKNPLADFLPVLKLYDLLYSDTEVLPVPDVTKPQSTHALASTSIWIHLNKKAHTDKARLQRPIPHALKDHLEFLKHAFSQKNLLLGDYKIALLCNAYSTNSEYFSLPMAILVENIHGNNKNTTLLPGNIVAGAPTQPLPMSLLDSLTVHAKMSLIHSIVTKVIQMAKKKTNIALAPALVETYSRLLVYMEIESLGIKAFISQLLPNVFASQAWGILHTLLEMFSYRLHHIQPHYRVQLLGHLHSLASVPQTNQNQLHLCVESTALRLITGLGSNEIQPQLTKVFKEPKGPNFLSLDSEELNRALVLTLARAMHITGAESLSGNWCWEILSAIMMNTPHGWPSHTLSSFPATISEFFNQNSAVKEDKTVLQKNVDTEYKKWRSMANENDIIAHFSMQGTPPLFLCIIWKNLLDDNRISSTAYKVLERLGPRSLSSHLRTFADFLVFEFSSSPSGPQLTKYVDVLNDMVWKYNIVTIDRVVLCLALRNLEANEAQVCCLIIQLLLMRHNDFKSRVSDFVKMNTGEHWSQNNWHENHMKFHRKYPEKFYYEGIQDLNSPNQHQYLPIYFGNVCLRFLPVLDIVIHRLLEVPLANKSLENILEHLGGLYKFHDSPVIYLYNTLHYYENKLSNQHVLKRKLVQAIVGALKEIRPPNWCLTEDYQNYLLKPSDDLTWIPDQEYYIRLVGRLVNTISDVSPSPFPCCDWRFNEFPNPAAHALHVTCIEIMALPIPSQIASAALLDVILTSCTRVPREKVMSWMNAVALILTSLPEHYFSVLNDKIVEQMCSPLLSSSNSRCDPFQLFNFKASHQVYAEQYCSYLLSLVHACWHHACIGQLSQIPAFVRDKLKPIIRTEEQFIFLCHLIGPFLQRFHAERTRCLIELTVELYEILENVDKVSEHMHMMDAISDFLYHIKYMFVGDGVKNDVEKIIRNLRPPLQLRLRFISRINIEETATSNSSAPTSASSSTSQPSKIQEGFHF
Length1369
PositionTail
OrganismOctopus bimaculoides (California two-spotted octopus)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Cephalopoda> Coleoidea> Octopodiformes> Octopoda> Incirrata> Octopodidae> Octopus.
Aromaticity0.09
Grand average of hydropathy-0.113
Instability index45.59
Isoelectric point7.11
Molecular weight156961.07
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04753
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     443.75|     123|     138|     941|    1075|       1
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  668-  742 (87.94/41.41)	.....................................................EIQPQLTKVFKEPKGP.....NFLSLDSEELNRAL..VLTLARAMHITGA..ESLSGN.WC..............W.EILSAIMMNtphgwPSHTLSSFP
  941- 1066 (201.99/138.73)	EGIQDLnSPNQHQYLPIYFG...NVCLRFLPVLDIVIHrLLEVP..LANKSLENILEHLGGLYKFHDSPVIYLYNTLHYYENKLSNQH..VLKRKLVQAIVGALkEIRPPN.WC..............LTEDYQNYLLK.....PSDDLTWIP
 1080- 1211 (153.81/84.88)	NTISDV.SPSPFPCCDWRFNefpNPAAHALHVTCIEIM.ALPIPsqIASAALLDVI..LTSCTRVPREKVMSWMNAVALILTSLPEHYfsVLNDKIVEQMCSPL..LSSSNsRCdpfqlfnfkashqvYAEQYCSYLL...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     213.89|      69|     312|      46|     120|       2
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   46-  120 (112.25/89.62)	FEKLKKiwcscpQENPEARESFLRYFVQCIHKQHNSKRSQT......LFDLLEMLVENNVVP..SRPICEALLTSEN..LHYKQK
  366-  444 (101.65/65.66)	YEKLKD......RNLKQGRDHLMWILLQFISGSVQKNPLADflpvlkLYDLLYSDTEVLPVPdvTKPQSTHALASTSiwIHLNKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.35|      36|     131|     143|     228|       5
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  180-  217 (61.51/109.23)	DRNSCLLPSYLAIFEIskLCADDKKWPHWKLGQVLAEF
 1264- 1299 (61.84/17.77)	ERTRCLIELTVELYEI..LENVDKVSEHMHMMDAISDF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04753 with Med23 domain of Kingdom Metazoa
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