<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04751

Description Uncharacterized protein (Fragment)
SequenceMVDGGSPFTTPSPGTRNWLGSPSAQGPSPVSRHGTATSPGHPALHSPQTQVKDSEHSKSSVVSPAPRMLPQRSWAASIPTILSHEAFSKLLTPCPLPGMNFLPASPLERFLGCVYFRRHLPRVIQGESSV
Length130
PositionTail
OrganismOctopus bimaculoides (California two-spotted octopus)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Cephalopoda> Coleoidea> Octopodiformes> Octopoda> Incirrata> Octopodidae> Octopus.
Aromaticity0.06
Grand average of hydropathy-0.335
Instability index71.73
Isoelectric point10.04
Molecular weight13873.63
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04751
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.07|      21|      24|       4|      25|       1
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    4-   25 (39.70/19.06)	GGSPF....TTPSPGtRNWLGSPSAQ
   26-   50 (37.37/14.47)	GPSPVsrhgTATSPG.HPALHSPQTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.73|      19|      26|      59|      79|       2
---------------------------------------------------------------------------
   59-   79 (29.95/23.57)	SSVVSPAPrmLPQRSWAASIP
   88-  106 (36.78/21.89)	SKLLTPCP..LPGMNFLPASP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04751 with Med14 domain of Kingdom Metazoa
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