<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04750

Description Uncharacterized protein
SequenceMADLENMENIAEAIRLTQKIRASVSRTFSDLSNGFHNSQGNEKKCLNDLQKSLLAINNDYNALEKVGNSLNPIDRVTNSFNLSLDPGIDKTPLYSQLLYTHKWITKTLELSNQAFSILNQSPLHRSVYASASSKRLRRQSPISHSVSTNALDVCLTNWDRSFPDMSFSILRPLGNCGVVQVTVGRAMNVLVILRGLIIEWVRVKGFTEDFFTDDGKINVWSKSKYQVFQMVTDHASAAMLHFYSPVIPDVAVKSFLTWLQKYSTLFSASCHKCNRYLQSGLPPTWRDFRTGEPYHEVCRG
Length300
PositionTail
OrganismOctopus bimaculoides (California two-spotted octopus)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Cephalopoda> Coleoidea> Octopodiformes> Octopoda> Incirrata> Octopodidae> Octopus.
Aromaticity0.10
Grand average of hydropathy-0.264
Instability index39.74
Isoelectric point9.08
Molecular weight33976.34
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04750
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.10|      12|      16|     120|     131|       1
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  120-  131 (22.20/14.67)	QSPLHRSVYASA
  139-  150 (21.90/14.39)	QSPISHSVSTNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.91|      12|      15|      46|      57|       2
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   46-   57 (18.74/12.72)	LNDLQKSLLAIN
   63-   74 (20.17/14.20)	LEKVGNSLNPID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.47|      29|      52|     178|     206|       3
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  178-  206 (47.94/34.93)	VVQVTVGRAMNVLVILRGLIIEWVRVKGF
  227-  255 (50.53/37.14)	VFQMVTDHASAAMLHFYSPVIPDVAVKSF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04750 with Med27 domain of Kingdom Metazoa
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