<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04695

Description Wd-repeat protein
SequenceMSFSSDEVNFLVYRYLQESGTETRLTESLSLIDAVTPDIVAARQNAHNAQKQAIKAEPSSGSEQNGVDVTVTTTPTTSTCTGSATPSAPPENMEVDTSIEIPASKATILRGHESEVFICAWNPSTDLLASGSGDSTARIWDMSDNPATTPNQLVLRHCIQKGGAEVPSNKDVTSLDWNCDGNLLATGSYDGYARIWTTDGTLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDASTGQCTQQFSFHLAPALDVDWQTNTSFASCSTDQCIHVCKLNAEKPIKSFQGHTNEVNAIKWDPQGKLLASCSDDMTLKIWSMNQDTCVHDLQAHSKEIYTIKWSPTGPGTQNPNMNLILASASFDSTVRLWDVERGVCIHTLTKHTEPVYSVAFSPDGKFLASGSFDKCVHIWSTQTGGLVHSYKGTGGIFEVCWNSRGTKVGASASDGSVFVLDLRKL
Length459
PositionTail
OrganismOperophtera brumata (winter moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Geometroidea> Geometridae> Larentiinae> Operophtera.
Aromaticity0.08
Grand average of hydropathy-0.302
Instability index30.18
Isoelectric point5.43
Molecular weight49714.93
Publications
PubMed=26227816

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04695
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     345.58|      39|      39|     267|     305|       1
---------------------------------------------------------------------------
  109-  142 (38.04/13.97)	.....LRG.HESEVFICAWNPST.........dllA.SGSGDSTARIWDM...
  166-  199 (43.53/16.79)	VP..S.....NKDVTSLDWNCDG.........nllA.TGSYDGYARI.W.TTD
  200-  233 (22.74/ 6.11)	GTLASTLGqHKGPIFALKWNKRG..........nyIlSAGVDKT.........
  261-  283 (28.97/ 9.31)	QTNTSF..............................aSCSTDQCIHVCKLNAE
  284-  325 (61.13/25.83)	KPIKSFQG.HTNEVNAIKWDPQG.........kllA.SCSDDMTLKIWSMNQD
  326-  376 (54.27/22.30)	TCVHDLQA.HSKEIYTIKWSPTGpgtqnpnmnlilA.SASFDSTVRLWDVERG
  377-  418 (59.04/24.75)	VCIHTLTK.HTEPVYSVAFSPDG.........kflA.SGSFDKCVHIWSTQTG
  419-  456 (37.85/13.87)	GLVHSYKG..TGGIFEVCWNSRG.........tkvG.ASASDGSVFVLDL...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.08|      24|      25|      56|      79|       2
---------------------------------------------------------------------------
   56-   79 (40.14/21.59)	AEPSSGSEQNGVDVTVTTTPTTST
   84-  107 (40.94/22.14)	ATPSAPPENMEVDTSIEIPASKAT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04695 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AARQNAHNAQKQAIKAEPSSGSEQNGVDVTVTTTPTTSTCTGSATPSAPPENMEVDTSIEIPAS
41
104










Molecular Recognition Features






MoRF SequenceStartStop




1) FLVYRYL
10
16