<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04682

Description Putative CRSP complex subunit (Fragment)
SequenceGKPLVHSSQLAWLRGVAQARLAAAGLSGALTALRYFCRSLSLELLYTQTLRLCRDRLELGCELGYRLIIGAEAESLCVWHVPALAGGERVSAALTPHAPSMERLLAHTVHVRSRQRLNDLKVECSVGGWPCVLACSVVAPCLRAEQLLVSVGAHGGRLRARVPAYPATPRMPDLANALAATNIPLIKNLLTHLRYYKVAAGTTATTSNTSNSGSACSVALSFHLAGARRCTPDECEDEVTRGDSNTSNSGSACSVALSFHLAGARRCTPDECEDEVTRGDSNTSNSGSACSVALSFHLAGARRCTPDECEVEVTRGDSNTSNSGSTCSVALSFHLHSSSAGAPAGAARAYLRIHSLPGKRKMSLVNARAVRVRQPAYFLPELAHVVAAADERVPFLAQRGVTHGGVQPEWSGSALAMRVVALPLPAGAEPRAAIALRSRLLAATVRLTTKNQARVWTAEFVFHGSPVRTPNPKEQERESLWQGICIRSYTYRSLVVGFGGAQRATALLQWSAASHRYTLATPAHQPAANAHHMLHHHLDHYINCHKDLMSLGVVLRETYAPLLALSRLPTLPQLGLHHIRIIYAGAYSIEVGIRGGGIVTIRDGSYSKFDRSSVVDEFAPAQGLKAFLSKYVDDINARLLAEDDNPPSPMSPMPPGPQASSTSGSRVLVGGRAWAGATATPIPVSKLETLCTPCEPPLGAPPGPSLAPLQRFLACLTMVSVEATSLTFRCESAGLAARVALHPQHMQSLHLHLTPLPDHKDTWSTDDLQEFACIPEQDGDKVLEIVVLKICLTRGDTQLVLPLVYDMQLNVTQLADKQNAQPHLIACCVYDMQLNVTQLADKQNAQPHLIAVSLHLKR
Length858
PositionTail
OrganismOperophtera brumata (winter moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Geometroidea> Geometridae> Larentiinae> Operophtera.
Aromaticity0.05
Grand average of hydropathy-0.035
Instability index44.20
Isoelectric point8.70
Molecular weight92138.52
Publications
PubMed=26227816

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04682
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     268.22|      34|      34|     221|     254|       1
---------------------------------------------------------------------------
  203-  239 (72.34/41.37)	TATTSNTSNSGSACSvalSFHLAGARRCTPDECEDEV
  240-  276 (76.27/44.01)	TRGDSNTSNSGSACSvalSFHLAGARRCTPDECEDEV
  277-  313 (75.14/43.25)	TRGDSNTSNSGSACSvalSFHLAGARRCTPDECEVEV
  314-  343 (44.48/22.68)	TRGDSNTSNSGSTCSvalSFHLHSSSAGAP.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.95|      23|      23|     804|     826|       2
---------------------------------------------------------------------------
  804-  826 (48.97/33.27)	VYDMQLNVTQLADKQNAQPHLIA
  829-  851 (48.97/33.27)	VYDMQLNVTQLADKQNAQPHLIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     160.34|      47|      71|      61|     108|       3
---------------------------------------------------------------------------
   41-   99 (70.10/33.41)	S..LELLYTQT.............................lrlcrdrlelgC..ELGYR.LIIG....A.EAESLCVWHVPAlAGGE...RVSA.ALTPHAP
  100-  172 (56.20/22.96)	S..MERLLAHT..................vhvrsrqrlndlkvecsvggwpC..VLACS.VVAP....ClRAEQLLV.SVGA.HGGRlraRVPAyPATPRMP
  434-  526 (34.03/11.40)	IalRSRLLAATvrlttknqarvwtaefvfhgspvrtpnpkeqereslwqgiCirSYTYRsLVVGfggaQ.RATALLQWS....AASH...RYTL.ATPAHQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.68|      12|     172|     392|     403|       4
---------------------------------------------------------------------------
  392-  403 (22.86/13.92)	RVPFLAQRGVTH
  567-  578 (23.83/14.87)	RLPTLPQLGLHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.65|      12|      44|     646|     657|       5
---------------------------------------------------------------------------
  646-  657 (28.66/12.43)	PPSPMSPMPPGP
  693-  704 (28.00/11.99)	PCEPPLGAPPGP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04682 with Med14 domain of Kingdom Metazoa
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