<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04678

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMMSEQFRKVEPYSPKSSPRGARSPVVSRQDSSGTLKTTISLGKNPSIVHSGPFYLMKEPPGECELTGATNLMAYYGLEHSYSKFNGKKLKESLSSFLPNLPGIVDGPGQEDNSTLGSVIAKRPIGGKELLPLSSAQLAGFRLHPGPLPEQYRYVSATPPKRHKSKHKKHKHKDGAPPGQETPLQDSSNPDTYEKKHKKQKRHDDDKERKKRKKEKKRKKQKHSPEHGGLTPSQHPIP
Length237
PositionHead
OrganismOperophtera brumata (winter moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Geometroidea> Geometridae> Larentiinae> Operophtera.
Aromaticity0.05
Grand average of hydropathy-1.189
Instability index58.63
Isoelectric point9.94
Molecular weight26407.74
Publications
PubMed=26227816

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP04678
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.04|      25|      48|     160|     184|       1
---------------------------------------------------------------------------
  160-  184 (47.53/19.14)	KRHKSKHKKHKHKDGAPPGQETPLQ
  190-  208 (31.25/10.60)	DTYEKKHKKQKRHDD...DKE...R
  210-  233 (41.25/15.84)	KRKKEK.KRKKQKHSPEHGGLTPSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.63|      23|      38|      86|     111|       2
---------------------------------------------------------------------------
   86-  111 (33.61/25.57)	GKKLkESLSSflPNLPG..IVDGPGQED
  126-  150 (38.02/18.84)	GKEL.LPLSS..AQLAGfrLHPGPLPEQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04678 with Med19 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EQFRKVEPYSPKSSPRGARSPVVSRQDSSGTLKTTISL
2) LPLSSAQLAGFRLHPGPLPEQYRYVSATPPKRHKSKHKKHKHKDGAPPGQETPLQDSSNPDTYEKKHKKQKRHDDDKERKKRKKEKKRKKQKHSPEHGGLTPSQHPIP
3) SFLPNLPGIVDGPGQEDNSTLGSVIAKRPIGGKE
4
130
95
41
237
128










Molecular Recognition Features






MoRF SequenceStartStop




1) KKHKKQKRHDDDKERKKRKKEKKRKKQKH
2) MMSEQFRKVEPYSPKS
3) QYRYVSAT
194
1
150
222
16
157