<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04667

Description RNA polymerase II holoenzyme cyclin-like subunit
SequenceMATDFWSSSHYKRWIVDRATLRQARREDLKYVDDPDHLYFLAIYFGNAISKLGKKLGLRQRAIATASVFFRRFYLKNAYCETDPFMVIAACCYVAAKAEESPVHIKNVVTESRSLFSQDAYNAKYFPSDHTKLAEMEFYLVDDLECDLVVFHPYRTLLTLCKKETPESASLFGSEEENALQTAWFIINDTYRSDLCLLHPPHIIAIAALYLTFVIHSPPGKVPSPVSADISAFATHSPTPAPQPRRSSRQHPPLSVETKPEDKSQDPISFFAGLNVSLPLVATVVQEIISLYTLWERVSTPIEMDEAEGYSEEEYVTPKFMSRLLLRMREARLGEMAHLACGRPVAINKMLERAQAAG
Length358
PositionKinase
OrganismTermitomyces sp. J132
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Lyophyllaceae> Termitomyces> unclassified Termitomyces.
Aromaticity0.11
Grand average of hydropathy-0.171
Instability index62.95
Isoelectric point6.14
Molecular weight40568.00
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04667
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.66|      41|      44|     113|     153|       1
---------------------------------------------------------------------------
  113-  153 (72.71/60.30)	RSLFS....QDAYNAKYFPSDHTKLAEMEFYLVDD.LECDLVVFHP
  155-  200 (60.95/49.21)	RTLLTlckkETPESASLFGSEEENALQTAWFIINDtYRSDLCLLHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.14|      15|      46|      25|      43|       2
---------------------------------------------------------------------------
   25-   43 (23.36/23.44)	RREDLK..YVD.DPdhlyFLAI
   71-   88 (22.78/11.77)	RRFYLKnaYCEtDP....FMVI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04667 with CycC domain of Kingdom Fungi
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