<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04635
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MTSSEQWGAFLHQCLMRRIDATEFKTLSKILFRRCPIAEGTLLDVLLEIRLATGIKWDPLLPLYIDCLCKMGKVQTSTVLTSLLKYSSIHDKPQSPDSEAVQSKKALKCYTLMTDIRVIQDAMLSVSTGSTPKSLADAVGIFSAIIDWIQAVVAWHNNHIDPNQQTGGLMSSPDAVSLFESLGILLTALSGTGKGIEVLSSDSHEALKVKLGQALSAYLPLCMEVSLPLRNRLDSLQKGFNLYGEPPNKSLQSMMDNVNVNALQFEASVMDGPVINSRAGLYIYINAMLVGRPLVDDSMLLNYLTNRYGGHYDVLVEEVITATFDVLSNALYRNESSRTMFMFRSFLVNKLPSFFAAMMAASMVSLPMEMCISHALSRLDPNTFPSFSQMFAMQGNTVLSEVRPEFLFACASHKLIPESSIERLLGENPMQTPPVGYNKDDLVSQINTNQERAEQLVSELESTEGNAGAIVAAITEVMHNLCNQKETVTLKNICNSLSRRPQALDVILLFRSAKQVLQPLCTLLDSWHWDEDQGESQPVYDEFGSILLLVLTFKYRYDLRPYDLGITSNDSFILKLLDCGASSQKLDDLSEKQNKNLGAWITALFIAEGISEETMSACSPQEFYLLVTTLFNQSLTACEAGKLEFDTLKGGFEYLLEPFLLPSLVVALTWLGNHIWETESDPTIPLKTLQSLVNPSSISGDAREIHKTVLNITARSLDEQLKDIRSRHPNRADIKPILDVLEPCLSFQRTGSCHRTELDSWTTHSPGGLLGSIRSTFQGLVLWSTSPGVSMAPHSYTHRQLVAGIRMLGSTRVLTAIVDELKVQSETGNADLALDIAVTMICAPLAESFAVEQSNYHPVDPNKDPLPRCPILTLRDALNSQHENVPKLSEKDPLRAEVIVRLYRRVDALMTLTSQMPNLDMSNIIQDMQLGVEDHGQMDLEPTSAGHDVGDDDAANLNRMLDNAAAAAAAGLDSGMGQSMGGALDTSIDDVLNAADMAVGNPEFLDLDMEGMF |
Length | 1013 |
Position | Tail |
Organism | Aspergillus nomius NRRL 13137 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.038 |
Instability index | 48.76 |
Isoelectric point | 4.86 |
Molecular weight | 111553.45 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 ARBA:ARBA00003669
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP04635
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 62.01| 17| 27| 858| 874| 1
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858- 874 (33.36/23.38) PVDPNKDPLPRCPILTL
886- 902 (28.66/18.94) PKLSEKDPLRAEVIVRL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 70.50| 24| 27| 563| 586| 2
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563- 586 (39.77/25.76) DLGITSN...DSFILKL.LDCGASSQKL
588- 615 (30.73/18.21) DLSEKQNknlGAWITALfIAEGISEETM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 384.71| 122| 296| 375| 541| 3
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407- 534 (195.00/180.06) LFACASHKL...IPESSIERLLgeNPMQTPPVGYNKDDLVSQINTNQERAEQLVSELESTEgNAGAIVAAITEV...MHNLCNQKETVTLKNICnslSRRPQALDVILLFRSAKQVLQ....PLC..TLLDSWHWDEDQG
635- 768 (189.71/97.89) LTACEAGKLefdTLKGGFEYLL..EPFLLPSLVVALTWLGNHIWETESDPTIPLKTLQSLV.NPSSISGDAREIhktVLNITARSLDEQLKDIR...SRHPNRADIKPILDVLEPCLSfqrtGSChrTELDSWTTHSPGG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 58.31| 17| 32| 349| 365| 5
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349- 365 (30.74/18.88) NKLPSF..FAAMMAASMVS
382- 400 (27.58/16.23) NTFPSFsqMFAMQGNTVLS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 49.95| 14| 15| 228| 241| 6
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228- 241 (24.34/13.66) PLRNRLDSLQKGFN
246- 259 (25.62/14.74) PPNKSLQSMMDNVN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 77.79| 24| 28| 957| 982| 8
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957- 982 (36.21/31.82) LNRMLDnaAAAAAAGLDSGMGQSMGG
988- 1011 (41.58/29.24) IDDVLN..AADMAVGNPEFLDLDMEG
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