<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04621

Description Uncharacterized protein
SequenceMPHPHSLKPNQTEKTGTSTTEKGCLTVYQLKPPEWRLPTQLNRPELGHPGLHHTHIGQHEDASTKSLVQRGFSAQMLLSTESFSAHQMIYKKITDEAGFNGPGEGFLQLAASNDTKSTIKVPGRVTLNEQKRKNLLRELADDSVPLLKLSKNVPRGFKGEKLLEMQVGRKIDCSRATWYIRLIGLNEINAQRNKNELSHVRYTLSFTSELCQFLQKQLAEVTVPLQMNLSSSTTSLIATSSRLAAMNVRNSRMLLKRLYFESLLDQPTLFKWLIDQIKVANLAQINFLLEIHHSVLDHFNLSSNLVRGFVEACLLQIRFITKQTGTSYLSKLERRLKLAVQRTFIFCPDNFVWPELWISTKFLLEEIMLTPIISTNSNPFEHNPQTRHLREMFKGDFHAVNWRVSELIGEVGSGTGIVENIFTRRAQLVGILDSYTDYNDCSKLYYKYFLNPSVAGHIPVSFKDKREVLLSWATTPLRNSDKRVQLVASTLSHVKHDYKKNGDEFQNILIGWLERVESIEGGDILVGLSPSFHVETFSLVAHTYNEWWPKGDTDCDIITGKASGLRALLSEWMPLASSKSARERSSSTKHSPGRDSARNGLMAIIADLNSAIASADYGRFAPLLKRRLDICQPTSANRKLLAEILPNALVNLISELAFPSLLGSSFLVSKTINHPQLVSTLLTWGIRLREACQAYATLIEIMQRIVQLDFLRSEARTNLNSSLQSTLCYLQVICLAASNNKELLEINGQLIDFISREFTIYVHSRR
Length766
PositionKinase
OrganismPuccinia striiformis f. sp. tritici PST-78
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Pucciniomycetes> Pucciniales> Pucciniaceae> Puccinia.
Aromaticity0.08
Grand average of hydropathy-0.219
Instability index36.71
Isoelectric point9.21
Molecular weight86645.56
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04621
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.89|      48|     235|      35|      87|       1
---------------------------------------------------------------------------
   35-   87 (66.23/78.36)	WrLPTQLNRPELGHPG....LHHThIGQHEDASTkSLVqRGFSAQMLLSTEsFSAHQ
  272-  323 (78.65/61.46)	W.LIDQIKVANLAQINflleIHHS.VLDHFNLSS.NLV.RGFVEACLLQIR.FITKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.90|      23|     100|     630|     654|       2
---------------------------------------------------------------------------
  630-  654 (32.39/29.19)	ICQPTSANRKLLaEIlPNALVNLIS
  733-  755 (40.51/26.13)	ICLAASNNKELL.EI.NGQLIDFIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     168.06|      39|      55|     157|     197|       3
---------------------------------------------------------------------------
   99-  136 (58.13/38.03)	FNGPGEGFLQLAASND.TKST..IKVPG....RVTLNEQKRKNLL
  157-  197 (59.20/47.56)	FKGEKLLEMQVGRKIDCSRATwyIRLIG....LNEINAQRNKNEL
  213-  254 (50.74/32.26)	FLQKQLAEVTVPLQMNLSSST..TSLIAtssrLAAMNV.RNSRML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.86|      34|      97|     466|     502|       4
---------------------------------------------------------------------------
  466-  502 (50.05/39.98)	REVLLSWatTPLrNSDKRVQLVASTLSHVK.HDYKKNG
  566-  600 (54.82/33.08)	RALLSEW..MPL.ASSKSARERSSSTKHSPgRDSARNG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04621 with Med12 domain of Kingdom Fungi
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