<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04610

Description Uncharacterized protein
SequenceMSSPGSSSSSDSSASSSSNPFDPSTLTQLQQQQHPRTTTTDLEQAINNLDPTTIEANSQATTTFTLSGFTNNNSNPMQSQNTDLTSIINTQTTNGPSQPISKTAHHVITAPSRGWMSQRKGRAVHIEDDPQSSLRNEIEGEFEDLDQSSEQHLYTSSHSSQRIIELGIVEEQLSQLLNLASDVLGSLGPPLDEDESTTTAIKSFSSSINEYFELLNVSISSSNPSPRCKNLKVRVHPMVLFTLLNRKFNPD
Length251
PositionHead
OrganismPuccinia striiformis f. sp. tritici PST-78
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Pucciniomycetes> Pucciniales> Pucciniaceae> Puccinia.
Aromaticity0.04
Grand average of hydropathy-0.663
Instability index63.63
Isoelectric point4.84
Molecular weight27423.57
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04610
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.96|      30|     201|      16|      47|       1
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   16-   47 (48.08/29.38)	SSSNPFDPSTLTqlQQQQHP.RTTTTDLEQAIN
   59-   89 (46.88/23.37)	QATTTFTLSGFT..NNNSNPmQSQNTDLTSIIN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.49|      41|      45|     126|     166|       3
---------------------------------------------------------------------------
  126-  166 (68.91/38.84)	IEDDPQSSLRN...EIEGEF...EDLDQSSEQHLYTSSHSSQRIIEL
  168-  214 (54.58/29.42)	IVEEQLSQLLNlasDVLGSLgppLDEDESTTTAIKSFSSSINEYFEL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04610 with Med11 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MSSPGSSSSSDSSASSSSNPFDPSTLTQLQQQQHPRTTTTDLEQAINNLDPTTIEANSQATTTFTLSGFTNNNSNPMQSQNTDLTSIINTQTTNGPSQPISKTAHHVITAPSRGWMSQRKGRAVHIEDDPQSSLRNEIEGEFEDLDQSSEQHLY
1
154










Molecular Recognition Features






MoRF SequenceStartStop




1) LKVRVHPMVLFTLLNRKFN
231
249