<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04574

Description Uncharacterized protein
SequenceMASWDPKMHIALYTTDRHGNAHRTLAQTSTHQHPHTQSRPQSVSQSQPPSPGKATTDAMGRRPSSLASGPAVSPAKATESDSRFGTPTPNQKRPIATSLSPRDNSAFLGLTATVAGVFRCAVQFTVLGRCGRSNADSTHDIDATSHAEDTSVNDYYVNAGRVCVTAVDEQVSVWHSSEHRVFRRMTDQANAAILYFTAHKPEAVLSSFLVWLHSYHNLFTAKCSRCDRHLCYDSEEFQYLPPVVRSFATENKKHIVYHRQCQYSSR
Length266
PositionTail
OrganismSphaeroforma arctica JP610
KingdomIchthyosporea
LineageEukaryota> Ichthyosporea> Ichthyophonida> Sphaeroforma.
Aromaticity0.08
Grand average of hydropathy-0.579
Instability index62.41
Isoelectric point8.99
Molecular weight29545.51
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04574
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.75|      34|      38|     173|     208|       1
---------------------------------------------------------------------------
  173-  208 (57.23/44.10)	VWHSSEHRVFRRMTDQANAAILY....FTAHKPeaVLSSF
  210-  247 (62.51/42.03)	VWLHSYHNLFTAKCSRCDRHLCYdseeFQYLPP..VVRSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.26|      21|      21|      50|      70|       3
---------------------------------------------------------------------------
   50-   70 (38.29/20.08)	SPGKAT.TDAMGRRPSSLASGP
   73-   94 (34.96/17.84)	SPAKATeSDSRFGTPTPNQKRP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04574 with Med27 domain of Kingdom Ichthyosporea
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