<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04570

Description Uncharacterized protein
SequenceMNPNMNMHAMPQQQMGGVGNIPGAVGPPNPMMQQGVSPLMQSSPQQATVGQQMVPQQQQMAGQMPQNPQGQQQQQQQQQHPQQPEKIDNISKVKSLFMPMRESLLLTFRGAAFTLQQNNMADNLKRDAVMNSARFDKHLEEFYTYCDQIELHLKTAMQCMQQLSSAQHYLPGAVTALRTEPYMQDNPAGPMPYPTFLNTVRVHIQSTKDLRDTLISASQNISQAD
Length225
PositionTail
OrganismLucilia cuprina (Green bottle fly) (Australian sheep blowfly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Oestroidea> Calliphoridae> Luciliinae> Lucilia.
Aromaticity0.05
Grand average of hydropathy-0.695
Instability index76.91
Isoelectric point6.58
Molecular weight25236.47
Publications
PubMed=26108605

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04570
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.47|      11|     148|       7|      39|       2
---------------------------------------------------------------------------
    2-   13 (20.35/14.77)	NPNM......nMHAMPQQ
   29-   46 (17.12/ 7.05)	NPMMqqgvsplMQSSPQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.48|      36|      42|      94|     129|       3
---------------------------------------------------------------------------
   94-  129 (60.56/33.96)	KSL..FMPMRESLLLTFRGAAFTLQQNNMADNLKRDAV
  137-  174 (60.92/34.20)	KHLeeFYTYCDQIELHLKTAMQCMQQLSSAQHYLPGAV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04570 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MNPNMNMHAMPQQQMGGVGNIPGAVGPPNPMMQQGVSPLMQSSPQQATVGQQMVPQQQQMAGQMPQNPQGQQQQQQQQQHPQQPEKIDNISKV
1
93










Molecular Recognition Features






MoRF SequenceStartStop




NANANA