<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04564

Description Mediator of RNA polymerase II transcription subunit 31 (Fragment)
SequenceARKQTLPCNMAKMYGKGKTAIESEEQQKLRFQVELEFVQCLANPNYLNFLAQRGYFKDQAFINYLKYLQYWKEPEYAKYLMYPMCLYFLDLLQYEHFRREIVNSQCCKFIDDQAILQWQHYTRKRIKMFNSVNGNTQNQLNAAPNSDNMAEAQQPQMGAQQPQQQQQGQTNIAACNMQNGSMVNTGNTQQQTQLAGQQQTQQLNGNSAANVNQSNAGGAPLMQKM
Length225
PositionMiddle
OrganismLucilia cuprina (Green bottle fly) (Australian sheep blowfly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Oestroidea> Calliphoridae> Luciliinae> Lucilia.
Aromaticity0.10
Grand average of hydropathy-0.797
Instability index47.55
Isoelectric point8.84
Molecular weight25955.05
Publications
PubMed=26108605

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364129
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP04564
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.98|      26|      29|     137|     165|       1
---------------------------------------------------------------------------
  153-  182 (40.27/17.07)	QQPQMGAQQPQQQ.......qQGQTNiA..ACNMQNgsM
  190-  225 (36.71/10.27)	QQTQLAGQQQTQQlngnsaanVNQSN.AggAPLMQK..M
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.04|      26|      29|      39|      67|       2
---------------------------------------------------------------------------
   39-   67 (43.13/29.09)	QCLANPNYLNFLAqrgYFKDQAFINYLKY
   69-   94 (51.91/27.59)	QYWKEPEYAKYLM...YPMCLYFLDLLQY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.63|      10|      25|      95|     104|       5
---------------------------------------------------------------------------
   95-  104 (18.12/13.20)	EHFRRE...IVNS
  119-  131 (14.51/ 9.43)	QHYTRKrikMFNS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04564 with Med31 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GNTQNQLNAAPNSDNMAEAQQPQMGAQQPQQQQQGQTNIAACNMQNGSMVNTGNTQQQTQLAGQQQTQQLNGNSAANVNQSNAGGAPLMQKM
134
225










Molecular Recognition Features






MoRF SequenceStartStop




NANANA