<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04547

Description Mediator of RNA polymerase II transcription subunit 27
SequenceMEKLNATLNAVKALRSSVRQCFEQLADGTTKQVDGTGVEQSEESRNKFLVEFQENYGNINQQLREVESLINGLQVPMSPYYLGNTTYLAQEITQDRQAMYPQLVNSYKWIDKVHEHSLLAFNNLNLNNLRRSYTYSQKRGRVQYTSCNNTDPEFIDNLFNSEITHTNTTYKVCRPFSSNAVVIATISHVLKAAIICKGVLIEWVTVKGYDEPLEIEDLWTESRYEVFRKVQEHTHSAMLHFFSPTLPELAVKSYMTWLNSYSKLFLEPCKRCGKYVSNGLPPTWRDLRTLEPFHEECKNC
Length300
PositionTail
OrganismLucilia cuprina (Green bottle fly) (Australian sheep blowfly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Oestroidea> Calliphoridae> Luciliinae> Lucilia.
Aromaticity0.11
Grand average of hydropathy-0.498
Instability index50.33
Isoelectric point6.46
Molecular weight34763.95
Publications
PubMed=26108605

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04547
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.86|      16|      25|     256|     272|       1
---------------------------------------------------------------------------
  256-  272 (29.64/26.52)	TWlNSYSKL..FLEPCKRC
  283-  300 (29.23/20.54)	TW.RDLRTLepFHEECKNC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.72|      27|     118|     107|     133|       2
---------------------------------------------------------------------------
  107-  133 (50.16/44.55)	YKWIDKVHEH...SLLAFNNLNLNNLR.RSY
  224-  254 (40.57/34.43)	YEVFRKVQEHthsAMLHFFSPTLPELAvKSY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04547 with Med27 domain of Kingdom Metazoa
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