<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04538

Description Uncharacterized protein
SequenceMGSNYEKENEEQLINYYAENTVFVAVGKNLNESESVLTWAVQKFSGKKRICILHVHQPHLLTFFDGKLSISKFKQRAVKALHESHMQKLHKLISQYVLFVSQMGVRADRMWIETESIEDGIVKMIAQHGIKWLVMGAAADKHYTKEMAVLKSQKAIFVYEQAPVSCHIWFTCKGKLICTRERIVNDPVVYTSEATESQNSNLDTKESDNTTRLGSAGAEFSSNPQPVDLNTVTKEAEHLTEEAPDRHSLYSDVSTEESESESLESDVLTEAEEAEHVRLNTLVADTLSSEPHVVAKEPGPVRIDRMAGENGSPPRLTFRERGSILRACSVDFSSDFEKRMVLYSPKNCSTSHDCIDIEKEDYQSEGNSQLSEFRSSIRSVSSEGKMAGKDKLQAPRETHGRLEQAISDAENLKKLAFQESVKRWKAEEDAVDAKRKADAAESKYIEQIKQRKSTEQALVKQNLECESIKEEYEKYMKELPIIQDQCFGLKTQIRESETAAKELEEKIISAVELLISFRNKRDQLQTERDNAVIERNNLKKLEQRRTSALSGLQFSTFSLVEVGEATCSFDPSKRIGDGRYGSVYRAILRHVHVAIQMLPDDGYLSQQMFEHGVEILSRIRHQNIATIIGICPEARSIIYEYLEKGSLEDQLTCRGKTPPLQWQTRVHIATELCSTLIFLHSNNPPIYHGNLKPSKVLLDANFTSKIGDLGIFFLTPQNQHSNSVYIDPVFLKTGVLTRDTDVYSFGMIVLRLLTDRPDTEILKDVKCALQKDKFESVLDFSAGDWPVNQARTLARMALRCCERNLTKRPDLGSDIWSVLEPLRKSCDAQASSCLQKKENIRPPSHFVCPIFKEVMKDPCTAADGYTYEEDAIRGWLESGHTTSPMTNLKLPTCNLIPNHTLQYAIQEWLQRCS
Length913
PositionTail
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.07
Grand average of hydropathy-0.497
Instability index46.34
Isoelectric point5.97
Molecular weight103514.21
Publications
PubMed=24352233

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04538
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.14|      22|      30|      43|      72|       1
---------------------------------------------------------------------------
   47-   72 (26.47/42.53)	KKRiCILHVHQPHLLTFFdgKLsISK
   74-   95 (37.67/21.30)	KQR.AVKALHESHMQKLH..KL.ISQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.92|      26|      30|     408|     436|       2
---------------------------------------------------------------------------
  373-  397 (18.29/ 7.00)	.........FRSSIRSVSSEgkmagKDKLQAPRE
  408-  436 (34.67/33.72)	DAENlKKlaFQESVKRWKAE.....EDAVDAKRK
  438-  457 (24.96/13.71)	DAAE.SK..YIEQIKQRKST.....EQA......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.79|      22|      31|     855|     877|       3
---------------------------------------------------------------------------
  855-  877 (38.07/33.17)	MKDP.CTAADGYTYEEdAIRGWLE
  888-  910 (37.71/26.93)	LKLPtCNLIPNHTLQY.AIQEWLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.35|      25|      30|     588|     612|       4
---------------------------------------------------------------------------
  588-  612 (45.91/38.86)	LRHVHVA..IQMLPDDGYLSQQMFEHG
  619-  645 (39.43/32.16)	IRHQNIAtiIGICPEARSIIYEYLEKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.03|      24|      30|     220|     247|       6
---------------------------------------------------------------------------
  201-  225 (33.77/14.80)	NLDTKESDNTTRLGSAGAeFSSNPQ
  230-  254 (36.27/26.35)	NTVTKEAEHLTEEAPDRHsLYSDVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.37|      26|      32|     659|     690|       7
---------------------------------------------------------------------------
  659-  690 (38.25/43.84)	PlqwqTRVHIATELCSTL....IFLHSnnPPIYHGN
  693-  722 (40.13/26.12)	P....SKVLLDANFTSKIgdlgIFFLT..PQNQHSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.98|      30|      30|     780|     809|       8
---------------------------------------------------------------------------
  780-  809 (53.74/32.29)	FSAGDWPVNQA..RTLARMALRCCERNLTKRP
  811-  842 (47.24/27.58)	LGSDIWSVLEPlrKSCDAQASSCLQKKENIRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.60|      28|      35|     481|     514|       9
---------------------------------------------------------------------------
  486-  514 (40.80/26.63)	CFG.....LKTQiRES....ETAAKELEEKIISAVELL
  516-  552 (34.81/11.12)	SFRnkrdqLQTE.RDNavieRNNLKKLEQRRTSALSGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.22|      22|      23|     277|     299|      12
---------------------------------------------------------------------------
  277-  299 (32.00/24.82)	VRLNTLVADTlSSEPHVVAKEPG
  301-  322 (39.22/25.91)	VRIDRMAGEN.GSPPRLTFRERG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04538 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VYTSEATESQNSNLDTKESDNTTRLGSAGAEFSSNPQPVDLNTVTKEAEHLTEEAPDRHSLYSDVSTEESESESLESDVLTEAEEAEHVRLNTLVADTLSSEPHVVAKEPGPVRIDRMAGENGSPPRLTFRE
189
320










Molecular Recognition Features






MoRF SequenceStartStop




NANANA