<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04536

Description Uncharacterized protein
SequenceMEQIQRPSSSRSYQLHPAKPIIIDLFNLYLGRSSRQKSDEQPPNKAQKRVTALNRDLPPPNERFVSDFEQVLRQFPDQEQLRLVTESVLISLVIQCSSHSPRAEFLLFALRSLCSIEHINWDTFVPSLLSAVSSAELSFGQGSQATPAVTSANVSQPGMPPSTNTISISSTFQSNPASPLISAQGIGSPAQSANEPSSALTSSPLKLNEISSNLQQSPLLVSSAIRDSAISSLRQLCCKIILISLDSTLKPATHAEILCHMQAWLVSWDQRHQASDDSDITKSWRPDKALIDWLHSCLDVVWLLVKEDKCRVPFYELLRSGLQFIENIPDDESLFTLIMEIHRRRDMMAMHMQMLDHHLHCPTFGTQRFLPLATPHFGGEVITNLRYSPITYPSVLGEPLHGEDLAVCIQKGTLDWDRALRCIRHALRTTPSPDWWKRVLLVAPCYRPHPNVSSSPGAVFTWDMICEATIDRIVELLKLTNSESNCWQEWLIFSDIFFFLMKSGCIDFVDFVDKLVLRLIEDDYHILRTNHVTWLLAQIIRVELVMNALNNDSRKVETTKKILSFHREDKSSDPNSPQSILLDFISSCQNLRIWSLNTLTRDHLNNEQLQKGKQIDEWWRQVSKGERMLDYMNMDERSIGMFWVVSYTMAQPACEMVMGWLTSAGTEVLPVSGIQSNERLVMMRETSPLPISLLSGFSINLCMKLAYQMEDSLFSGQVIPSIGMVETYTRLLLIAPYSLFRSHFSHLTQRNPSTLSKPLATLLVLEILNYRLLPLYRYEGKNKSLMYDVTKIVAALKGKRGDHRLFRLAENLCLNLILSLRDFFSVKKEGKGPTEFTETLNRIAITSLAIIIKTRGIAESEHLLYLPAMVEQILSSSQHTWSDKTLRYFPPVLRDTLVGRADKRGLAVQAWQQAETTVINQCTQLLSPSADPTYVVTYISHSFPQHRQYLCAGAWILMHGHPESINSANLARVLREFSPEEVTANIYTMVDVLLHHIHVEIQRGHPLQDLLLKASSNLAFFIWTHELLPLDILILALIDRDDDAHALHIVISLLDRQELQQRLKLFYLTRGPPEHWLYSGMFKRVDLQKALGHHLSWKERFPVIFDDIAARLLPVIPLVVYRLIENDAMDHAERVLVMYKQLLAYHPLRFTFVRDILAYFYGHLPGKLIVRILNVLDISKIPFSESFPQHIALSNSSACPPPDYFASLLLGLVNNVIPPLGSSSKSGSILDASYLSSRCPPNKTSITNQSGQTNVSEVQKAFYQIQDPGTYTQLVLETAVMELLSLPVSASQIVASLVQIVVHIQSTLIQSSNGLHGTSNSSGQTSVLPTSPSGGSTDSMNASRSAPPVSGLNTSNFVSRSGYTCQQLSCLLIQACGLLLAQLPQDFHIQLYLEVSRLVKETWWLTDGKRSPSELDSAVNYALLDPTWAAQDNTSTAIGNVVGLLHSFFSNLPQEWLEGAHVIIKQLRPITSVAMLRIVFRIMGPLLPRLANAHTLFNKTLSLLLGSMVDVFGKTAQPSVPAQASEIIDLIDFLHHVVHYEGQVGPVQSTSKPRAEVLVLFSRALESLRPDAQHLLSHLTTDVNSSVYASTHPKLVQNPMS
Length1601
PositionTail
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.08
Grand average of hydropathy-0.033
Instability index49.46
Isoelectric point6.60
Molecular weight179945.13
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04536
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     465.60|     155|     183|     848|    1030|       1
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  848- 1019 (229.49/184.10)	LAIIikTRGiaESEHLLYlpaMVEQILsSSQHTWSDKTLRYF...PP..VLRDTLVGRAD.KRGLAVQ.AWQQAETTVINQCTQLLSPSAdPTYVVTYISHSFPQHRQYLCAGAWILMHGHPESInsaNLAR.VLREFS...PEEVTANIYTMVDVllhhIHVEIQRGHPlQDLLLKASSNLA
 1035- 1200 (236.11/159.81)	LALI..DRD..DDAHALH...IVISLL.DRQELQQRLKLFYLtrgPPehWLYSGMFKRVDlQKALGHHlSWKERFPVIFDDIAARLLPVI.PLVVYRLIENDAMDHAERVLVMYKQLLAYHPLRF...TFVRdILAYFYghlPGKLIVRILNVLDI....SKIPFSESFP.QHIALSNSSACP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     337.24|     110|     180|    1201|    1320|       2
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 1201- 1320 (163.20/125.43)	PPDYFASLLLgLVNNVIPP...LGSSSKSGSILDASYLSSRCPPNKTSITNQSGQT.NVSEVQKAFYqiqdpGTYTQLVLETAVMELLSL.PVSAsqiVAsLVQIVVHIQSTLIQSSNGLHGTSN
 1384- 1498 (174.05/106.93)	PQDFHIQLYL.EVSRLVKEtwwLTDGKRSPSELDSAVNYALLDPTWAAQDNTSTAIgNVVGLLHSFF.....SNLPQEWLEGAHVIIKQLrPITS...VA.MLRIVFRIMGPLLPRLANAHTLFN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.05|      16|      16|     131|     146|       3
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  131-  146 (28.21/18.95)	AVSSAELS.FGQ.GSQAT
  148-  165 (18.84/ 9.67)	AVTSANVSqPGMpPSTNT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.30|      30|     180|     302|     338|       5
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  302-  338 (42.11/48.76)	WLLVKEdkcrvPFYELLRSG.LQFIENIpdDESLFTLI
  490-  520 (49.19/33.18)	WLIFSD.....IFFFLMKSGcIDFVDFV..DKLVLRLI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.88|      13|      19|     210|     222|       6
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  168-  183 (16.33/ 6.56)	ISSTFQSnpaSPLISA
  210-  222 (23.55/12.93)	ISSNLQQ...SPLLVS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.81|      24|     180|     413|     439|       7
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  413-  439 (38.65/39.39)	TLDWDRaLRciRHALRTTPSPD.WWKRV
  598-  622 (41.16/27.91)	TLTRDH.LN..NEQLQKGKQIDeWWRQV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.19|      13|      16|     368|     380|       8
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  368-  380 (25.48/15.43)	RFLPLATPHFGGE
  386-  398 (24.71/14.72)	RYSPITYPSVLGE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.20|      15|     109|     700|     715|      10
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  700-  715 (24.68/21.06)	NLCMKLAYQMEDsLFS
  811-  825 (27.51/18.03)	NLCLNLILSLRD.FFS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.20|      14|      16|      57|      72|      11
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   57-   72 (21.09/19.57)	LPPPNE.RFVSdfEQVL
   75-   89 (20.10/10.34)	FPDQEQlRLVT..ESVL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.61|      52|     793|     740|     795|      13
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  740-  795 (82.84/61.02)	FRSHFSHLT.QRNP..STlSKPLATLLVLEilnYRLLPLYRYEGKN..KSLMYDVTKIVAA
 1533- 1589 (78.77/46.94)	FLHHVVHYEgQVGPvqST.SKPRAEVLVLF...SRALESLRPDAQHllSHLTTDVNSSVYA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04536 with Med23 domain of Kingdom Viridiplantae
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