<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04532

Description Uncharacterized protein
SequenceMAERKAADEGKFLVGVALTCSRKSKFILKWALDKFLPEGDVTFKLIYVYPKITIVPTAMGTWLPVAQVREDVVTGYRQETEWKKQRKLLPYQKILRAQKVKADIIVLESDDVAMALSLYTTRQEIRHLVIGVSTNGIFSLKNLSLIRGDDLSQVISENAPTFCSVYVIGDGKLQQLRPADSEQNVITVDETSNLSTTSTDSSSSSSSLTIDGGLATPSEPSPSTSQPKQHEPLPRTDVGHKTLARETTELRHYAFKDTNMNFASIRSHSSSSGDSGSWISDRTSPGGSFAGTQSDALSPMGTPPPRSYLQTPPPSGAFVGTSHAVSYAETPPTSYYRGTPTSVSPIGTPPTRSYAGTPLAMSRPGTPPGGSYVGSIPAVPYVGTPPPSVSFLGPSGSELSASPNQFHFPLDQLQEISKERLEEALKLKAEQCNEFEKNKHKTAQFEAVDNRGRAARNRSYDKAEAKAAKEEEESKNKLKELFLSPAVQYQKFTWDEIVEATSSLSEEYKIGAGAFGTVYKCKLHHTTVAVKVLHCKNSVTNKQFVQELEILSNIRHPHLLLLLGAVPEESSLIYEYMDHGSLDDRLFQKDGRPPLPWYERFRICFEVAGALAFLHSTKPRPIIHRDLKPANILLDHNLVSKIGDAGLGTMINVEPTNVSLKTMYKETSPVGTLCYIDPEYQRTGRVSTKSDIYALGVVILQLLTAKPAVGISYLVEDAIDEGTLTEFLDPEAGEWPEKESLELALLGLQCSELRGRDRPDLREKVLPALERMKEVADIARESASYAQTATPAHYICPILKELMEDPYVAADGYTYDRGAIEQWLTENDTSPTTNQQLPHKFIMPNTALLEAITQWKSKKRTK
Length862
PositionTail
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.08
Grand average of hydropathy-0.404
Instability index43.83
Isoelectric point6.16
Molecular weight95146.66
Publications
PubMed=24352233

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04532
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     160.66|      35|      35|     320|     354|       1
---------------------------------------------------------------------------
  237-  265 (23.36/ 6.07)	DVGHKTLARE........TTELRHY..afKDTNM.NFASI........
  267-  308 (42.02/16.30)	..SHSSSSGDsgswisdrTSPGGSF....AGTQSdALSPMGTPPPRSY
  320-  354 (67.55/30.29)	GTSHAVSYAE........TPPTSYY....RGTPT.SVSPIGTPPTRSY
  374-  403 (27.74/ 8.48)	GSIPAVPYVG........TPPPSVSflgpSGSEL.SASP.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     364.31|     116|     136|     509|     630|       2
---------------------------------------------------------------------------
  509-  630 (190.61/139.88)	KIGAGAFGTVYkcKLHHTTVAVKVLHCKNS.VTNKQFVQ.ELEILSNIRHPH........LLLLLGAVPEE..SSLIYEYMDHGSLDDRLFQKDGRpplpWYERFRICFEVAGALAFLHSTKPRPIIHRDLKPA
  641-  768 (173.70/111.42)	KIGDAGLGTMI..NVEPTNVSLKTMYKETSpVGTLCYIDpEYQRTGRVSTKSdiyalgvvILQLLTAKPAVgiSYLVEDAIDEGTLTEFLDPEAGE....WPEKESLELALLGLQCSELRGRDRPDLREKVLPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.91|      36|      37|     405|     441|       3
---------------------------------------------------------------------------
  405-  441 (56.40/41.48)	QFHfPLDQLQEISKERLEEALKLKAEQCNEFEKNKHK
  444-  479 (57.51/37.16)	QFE.AVDNRGRAARNRSYDKAEAKAAKEEEESKNKLK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04532 with Med32 domain of Kingdom Viridiplantae
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