<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04526

Description Uncharacterized protein
SequenceMADGGAMEISLDKLPIKRLDAIEESGVERFPPEIEYEEKAVNLIRRVDFAWALERDAKKQKKAKEASAPSTWQGLVENLTLAHQELSVIIDLINTVEANDAVTVAHMNRPKPLPNEAMSDLAVSAATKLQCYRHLSKYFKQSAKSLEHQIAREARFYGALIRLQQNWKVKWHRLAATAPGSDGFLIDLSNNAAHEQPAVPRAPTFSMVRVDHDSSGMLAVNLPKNSCRSFHFGFLDAQSGDSDSPEGCGRMNLDTGDSPKESSDDDRIRETHTVLCNTHRAIFYEQVFELVSRESFNPSLGVNVTGIRENYLELSIKPGVSVFILLRPYNQEDQGKNSSDTQNVDDLAKGSSLVESKQHIKLISGHPNPITYEIYLQQLFRNEIFSKVKHQPTLPGKVQSNQQTNDAAGLVNHFCLSLAHRTFSSKVLVELENLVTKIPYLRLISQPTWHSRSSSWALSVNVPKARSAESQAWRSNEDHTKENKLLFQTRVVVKDDCISIEGGGAPNVLFKGKPEAMGSKNKFNCDIVDLPMVLLLQVASQIIYWLHEEALTVGIKTNQDFLCLSLELEQGETLSLVAHVDPEDELGCISWWLTVDDGSTEEHKLQADIPDGESPSRRFLGHLSLNALYSTLMDLVSLCNVSVSH
Length645
PositionHead
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.07
Grand average of hydropathy-0.356
Instability index41.40
Isoelectric point5.74
Molecular weight71983.54
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04526
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.51|      37|     237|     181|     224|       1
---------------------------------------------------------------------------
  181-  224 (59.05/50.40)	SDGFLIDLSNnaaheqpAVPRAPTFSMVRVD..H..DSSGMLAVNLPK
  424-  464 (54.45/32.43)	SSKVLVELEN.......LVTKIPYLRLISQPtwHsrSSSWALSVNVPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.18|      23|     238|     307|     386|       2
---------------------------------------------------------------------------
  257-  279 (42.34/48.82)	DSPKESSD....DDRIRETHTVLCNTH
  333-  359 (33.84/54.76)	DQGKNSSDtqnvDDLAKGSSLVESKQH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04526 with Med17 domain of Kingdom Viridiplantae
Unable to open file!