<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04524

Description Uncharacterized protein
SequenceMGSSREVVEEARKGMVVENKVFVAVSKVLKESKSTLSWALQNSNGKKICIIYVHVPAKMIPMPMGGKFPASQVGEKELNAFREQEDKEMHKILDGYLQCCAQVGAHAEKIHIEMDSIEEGIVEIITQQRIGRLVMGAAADSRFSRKMVEPKSIKANYVRQHAPDFCHIRFICRGRLICVREGLRQPSSDIEGRSSNSLESDQIDAGILSQVLDSIRISDFGGSEGSSDRFDQSSRASFSQSSILSLEAQSAFSSPCSSFSREGVRESDLELLVLPETKIKHQESSPPSVLQERSMNDDLYDQLVQAMEEADNSKREAFEESMRRRKAEKEAMEAIRKAKTAERLYFEEVRRRKDQEEELAKRKEELEFTKCQLKKVLQELQKASDQRLSLETQYEKSKLTEKEMEEKMFSAVDLLQKYKNEREELQVERDRALQEAEVLRKQFPQGTSSSHVPFFFSEFSFSDLEKATDSFHPSLKIGEGGYGSIYKGFLRQTQVAVKVLNPNSRQGPREFGQEVDVLSKLRHPNLVTLIGACPESWALVYEYLSGGSLEDRLVCKDNTPPLAWQTRIQIATELCAVLIFLHSSRPTSIIHGDIKPSNILLDDNFVCKLADFGICRVISHSKTSLEETTRCCTTEPKGTFTYMDPEFLTTGELTPKSDIYSFGIILLRLLTGRPAMGITKEVEYALGNGNLNCLLDPSAGDWPFVKAEQLARMALRCCDMNGRNRPDLESDIWRVLEPMKASSRSLSMLGPTSDDQAPHYFICPIFQELMEDPQIASDGFTYEAEAIRGWLDSGHDTSPMTDAKLANHDFIPNHALRSAIQELDQFSDGFQAPVSSVQEAEVKAFQECERKEALDMLDDCLRICALKEIPSKKVYIEKETVTDGILELISQLRITNFVMGAGPNSKYSRRMTKPLSKKANYVLHCAPDFCHIWFVCKDQLIYTREGVKQPYVDVERRPSNVSDNDKPDAGISSQELSFGLRLPDFDEYESSPDSFDQSPGVSLSQSSTFLSEMESVLSSPSSSFAIKEVREFGLQLLALPQTINQYQDLSPPSVLEENKMSDDDPYEQLEQAMTEAENSKREAFEESMRRLKAEKKALVAARKVKAAQRLYFEELRQRKEIQEELAENKKEIEVTKSLLEKVSQELQEALHQKLTLESQFEKSCNSEKEMEDKLLSAVDLLQKFKNRRDELHVERDHALLEAKELRKQLSQGPSSSCVLMFSEFSLSDLEVATNYFDPSLKIGGGGNGSTYKGFLHHIEVAIKMLKPNTIHGAREFKKEMDILSKLRHPNLVTLFGACPESCALVFEYLPRGSLEDRLNCKDNTHPLPWQTRIQIATQLCSVLNFLHSRQPSSIIHGDLKPANILLDDNFVCKLRNFGICHIISNGGTSVEQTMGFITSDLKGTFTHMDPEFLATGELTPKSDIYSFGVILLRLLTGKPAVGITKEVECALDKCNLICVLDPTAGDWPFVQAEQLARMALRCCDMNQRNRPDLALDIWRVLEPMKATSQHLSKFLLASEDRAPHYFICPIFQEIMEDPQIASDGFTYEAEAIRGWLESGHYTSPMTNVSLANHDLIPNRALRSAIQEWLQHHSSG
Length1595
PositionTail
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.07
Grand average of hydropathy-0.437
Instability index50.98
Isoelectric point5.44
Molecular weight180143.80
Publications
PubMed=24352233

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04524
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     262.31|      52|      85|      94|     145|       1
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   94-  143 (73.62/61.67)	.....................................DGYLQCCAQVGAHAEKIHIEMDSIEEGIV.EIIT.QQRIGRLVMGAAADSRF
  144-  230 (59.89/48.21)	SRkmvepksikanyvrqhapdfchirficrgrlicvrEGLRQPSSDIEGRSSN.SLESDQIDAGILsQVLD.SIRISDFGGSEGSSDRF
  858-  907 (71.79/59.87)	.....................................DDCLRICALKEIPSKKVYIEKETVTDGIL.ELIS.QLRITNFVMGAGPNSKY
  908-  995 (57.02/45.40)	SRrmtkplskkanyvlhcapdfchiwfvckdqliytrEGVKQPYVDVERRPSN.VSDNDKPDAGISsQELSfGLRLPDFDEYESSPDSF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     172.75|      34|      85|     289|     322|       2
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  289-  320 (51.81/34.31)	..VLQERSM.NDDLY......DQLVQAMEEADNSKREAFEE
  321-  348 (30.88/17.22)	SM.............rrrkaeKEAMEAIRKAKTAERLYFEE
 1054- 1086 (47.50/30.80)	..VLEENKMsDDDPY......EQLEQAMTEAENSKREAFEE
 1087- 1114 (42.56/26.76)	SM....RRL.KAE........KKALVAARKVKAAQRLYFEE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|    1925.75|     480|     763|     146|     829|       3
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  349-  829 (963.48/667.66)	VRRRKDQEEELAKRKEELEFTKCQLKKVLQELQKASDQRLSLETQYEKSKLTEKEMEEKMFSAVDLLQKYKNEREELQVERDRALQEAEVLRKQFPQGTSSSHVpFFFSEFSFSDLEKATDSFHPSLKIGEGGYGSIYKGFLRQTQVAVKVLNPNSRQGPREFGQEVDVLSKLRHPNLVTLIGACPESWALVYEYLSGGSLEDRLVCKDNTPPLAWQTRIQIATELCAVLIFLHSSRPTSIIHGDIKPSNILLDDNFVCKLADFGICRVISHSKTSLEETTRCCTTEPKGTFTYMDPEFLTTGELTPKSDIYSFGIILLRLLTGRPAMGITKEVEYALGNGNLNCLLDPSAGDWPFVKAEQLARMALRCCDMNGRNRPDLESDIWRVLEPMKASSRSLSMLGPTSDDQAPHYFICPIFQELMEDPQIASDGFTYEAEAIRGWLDSGHDTSPMTDAKLANHDFIPNHALRSAIQE.LDQFSDG
 1115- 1595 (962.27/554.33)	LRQRKEIQEELAENKKEIEVTKSLLEKVSQELQEALHQKLTLESQFEKSCNSEKEMEDKLLSAVDLLQKFKNRRDELHVERDHALLEAKELRKQLSQGPSSSCV.LMFSEFSLSDLEVATNYFDPSLKIGGGGNGSTYKGFLHHIEVAIKMLKPNTIHGAREFKKEMDILSKLRHPNLVTLFGACPESCALVFEYLPRGSLEDRLNCKDNTHPLPWQTRIQIATQLCSVLNFLHSRQPSSIIHGDLKPANILLDDNFVCKLRNFGICHIISNGGTSVEQTMGFITSDLKGTFTHMDPEFLATGELTPKSDIYSFGVILLRLLTGKPAVGITKEVECALDKCNLICVLDPTAGDWPFVQAEQLARMALRCCDMNQRNRPDLALDIWRVLEPMKATSQHLSKFLLASEDRAPHYFICPIFQEIMEDPQIASDGFTYEAEAIRGWLESGHYTSPMTNVSLANHDLIPNRALRSAIQEwLQHHSSG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     286.03|      93|     762|     146|     288|       4
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  146-  288 (152.39/87.83)	KMVEPKSIKANYVRQHAPDFCHIRFICRGRLICVR.eglrqpssdiegrssnslesdqidagilsqvldsirisdfggsegssdrfDQSSRASFSQSSILSLEAQSAFSSPCSSFSREGVRESDLELLVLPETKIKHQESSPPS
  910-  944 (46.45/21.65)	RMTKPLSKKANYVLHCAPDFCHIWFVCKDQLIYTR.............................................................................................................
  996- 1053 (87.18/47.09)	...................................egvkqpyvdverrpsnvsdndkpdagissqelsfglrlpdfdeyesspdsfDQSPGVSLSQSSTFLSEMESVLSSPSSSFAIKEVREFGLQLLALPQTINQYQDLSPPS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.45|      25|     762|      69|      93|       5
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   69-   93 (44.58/29.82)	PASQVGEKELNAFREQEDKEMHKIL
  833-  857 (43.88/29.23)	PVSSVQEAEVKAFQECERKEALDML
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04524 with Med32 domain of Kingdom Viridiplantae
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