<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04523

Description Uncharacterized protein
SequenceMVMEDQNKIYVAVGKEEFEDRKSTLNWALQMSKGETICVIHVHVPTQKIRRPKRYGFRSPLKAVTQSEVNQELERQEVEEMLDDCIKMYALKQVPSEKICIEKESVTDGILELISELGIQKLVMGAGSNSRFLRIKPKPTSEQSNEVLNKAPDFCHIWFVYKGRLIYTREATKQLNHRLEENQLNRLSYSEQSVDSPSAESAGSSSPLSQNMQHDSSPATVLQPTIISNDPFGQLQQALKKAERARQEASEESERRQKAEKETMNAIHKLKSAEDDLTKVTRNLVAIQFKLSKDLKKLTQAAGEFSSLERQIEDCSNLEVEEMEERILFTEKLQKNKKQCDKMRMDYDDSFDVYLSADDDSVDVVHVLEKQVFLEPSSSNNTTFSCEFSQSDIIEATMLFDPSLRIQEGDNDSVYKGFLHNTEVAIKILKPNSLLAIQGIAKFKQEVDVLSKLRHPNLVTLIGVCPDSLALIYEYLPNGSLEDRLNCKDNTPPLPWRTRIHIVTELCSVLNFLHSILPCSIIHSNLSPKYVLLDANFSCKLSGFGFCHIIPTNEQINRTNELNDTSYLDPEISPKSDVYSFGIILLRLLTGRPSLNIVTEVQHALENDHLHRILDPSAGDWPVVQAQHLAHMALKCCDVNTKDRPDLGSEVWRGLKPLMTSTKSLSNPLQPVSGDQIPSYFICPIFQDIMRDPHFAADGFTYEADAVRGWFESGRDTSPMTNLKLDSHNLTPNRALRSAIQEWLQKYNLV
Length750
PositionTail
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.07
Grand average of hydropathy-0.445
Instability index48.86
Isoelectric point5.57
Molecular weight85130.80
Publications
PubMed=24352233

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04523
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.76|      17|      50|     345|     362|       1
---------------------------------------------------------------------------
  345-  362 (27.43/21.98)	MDYDDSFDVYlSADDDSV
  398-  414 (31.32/20.19)	MLFDPSLRIQ.EGDNDSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.06|      28|      53|     592|     620|       2
---------------------------------------------------------------------------
   58-   83 (27.41/12.40)	RSPLKAVTqsEVNQELE.....RQEVEEMLD....
  592-  619 (48.96/31.25)	RPSLNIVT..EVQHALE.....NDHLHRILDPSAG
  644-  674 (38.69/16.58)	RPDLG..S..EVWRGLKplmtsTKSLSNPLQPVSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.30|      26|      50|     461|     488|       3
---------------------------------------------------------------------------
  461-  488 (44.15/39.82)	LIGVCPDSlaLIYEYL.PNGSLED.RLNCK
  513-  540 (40.15/28.95)	LHSILPCS..IIHSNLsPKYVLLDaNFSCK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     172.07|      55|      59|     137|     193|       4
---------------------------------------------------------------------------
  137-  193 (85.37/59.73)	PKPTSEQSNEVL..NKAPDFCHIwFVYKGRLIyTREATKQLNHRLEENQLNRLSYSEQS
  197-  253 (86.70/50.58)	PSAESAGSSSPLsqNMQHDSSPA.TVLQPTII.SNDPFGQLQQALKKAERARQEASEES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.82|      13|      59|      27|      39|       5
---------------------------------------------------------------------------
   27-   39 (24.90/16.92)	WALQMSKGETICV
   89-  101 (23.92/15.96)	YALKQVPSEKICI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04523 with Med32 domain of Kingdom Viridiplantae
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