<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04520

Description Uncharacterized protein
SequenceMVMEDQNKIYVAVGKEEFEDRKSTLNWALQMSKGETICVIHVHVPTQKIRRPKRYGFRSPLKAVTQSEVNQELERQEVEEMLDDCIKMYALKQVPSEKICIEKESITDGILELISELGIQKLVMGAGSNSRFLREATKQLNHRLEENQLNRLSYSEQSVDSPSAESAGSSSPLSQNMQHDSSPATVLQPTIISNDPFGQLQQALKKAERARQEASEESERRQKAEKETMNAIHKLKSAEDDLTKVTRNLVAIQFKLSKDLKKLTQAAGEFSSLERQIEDCSNLEVEEMEERILFTEKLQKNKKQCDKMRMDYDDSFDVYLSADDDSVDVVHVLEKQVFLEPSSSNNTTFSCEFSQSDIIEATMLFDPSLRIQEGDNDSVYKGFLHNTEVAIKILKPNSLLAIQGIAKFKQEVDVLSKLRHPNLVTLIGVCPDSLALIYEYLPNGSLEDRLNCKDNTPPLPWRTRIHIVTELCSVLNFLHSILPCSIIHSNLSPKYVLLDANFSCKLSGFGFCHIIPTNEQINRTNELNDTSYLDPEISPKSDVYSFGIILLRLLTGRPSLNIVTEVQHALENDHLHRILDPSAGDWPVVQAQHLAHMALKCCDVNTKDRPDLGSEVWRGLKPLMTSTKSLSNPLQPVSGDQIPSYFICPIFQDIMRDPHFAADGFTYEADAVRGWFESGRDTSPMTNLKLDSHNLTPNRALRSAIQEWLQKYNLV
Length715
PositionTail
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.06
Grand average of hydropathy-0.437
Instability index48.94
Isoelectric point5.39
Molecular weight80983.05
Publications
PubMed=24352233

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04520
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.76|      17|      51|     310|     327|       1
---------------------------------------------------------------------------
  310-  327 (27.43/23.69)	MDYDDSFDVYlSADDDSV
  363-  379 (31.32/21.79)	MLFDPSLRIQ.EGDNDSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.06|      28|      53|     557|     585|       2
---------------------------------------------------------------------------
   58-   83 (27.41/13.45)	RSPLKAVTqsEVNQELE.....RQEVEEMLD....
  557-  584 (48.96/33.89)	RPSLNIVT..EVQHALE.....NDHLHRILDPSAG
  609-  639 (38.69/17.98)	RPDLG..S..EVWRGLKplmtsTKSLSNPLQPVSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.97|      17|      53|     199|     222|       3
---------------------------------------------------------------------------
  199-  215 (26.58/ 9.26)	QLQQALKKAERARQEAS
  255-  271 (26.39/11.00)	KLSKDLKKLTQAAGEFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.82|      13|      59|      27|      39|       4
---------------------------------------------------------------------------
   27-   39 (24.90/13.93)	WALQMSKGETICV
   89-  101 (23.92/13.14)	YALKQVPSEKICI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04520 with Med32 domain of Kingdom Viridiplantae
Unable to open file!