<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04519

Description Uncharacterized protein
SequenceMVMEDQNKIYVAVGKEEFEDRKSTLNWALQMSKGETICVIHVHVPTQKIRRPKRYGFRSPLKAVTQSEVNQELERQEVEEMLDDCIKMYALKQVPSEKICIEKESVTDGILELISELGIQKLVMGAGSNSRFLRIKPKPTSEQSNEVLNKAPDFCHIWFVYKGRLIYTREATKQLNHRLEENQLNRLSYSEQSVDSPSAESAGSSSPLSQNMQHDSSPATVLPTIISNDPFGQLQQALKKAERARQEASEESERRQKAEKETMNAIHKLKSAEDDLTKVTRNLVAIQFKLSKDLKKLTQAAGEFSSLERQIEDCSNLEVEEMEERILFTEKLQKNKKQCDKMRMDYDDSFDVYLSADDDSVDVVHVLEKQVFLEPSSSNNTTFSCEFSQSDIIEATMLFDPSLRIQEGDNDSVYKGFLHNTEVAIKILKPNSLLAIQGIAKFKQEVDVLSKLRHPNLVTLIGVCPDSLALIYEYLPNGSLEDRLNCKDNTPPLPWRTRIHIVTELCSVLNFLHSILPCSIIHSNLSPKYVLLDANFSCKLSGFGFCHIIPTNEQINRTNELNDTSYLDPEISPKSDVYSFGIILLRLLTGRPSLNIVTEVQHALENDHLHRILDPSAGDWPVVQAQHLAHMALKCCDVNTKDRPDLGSEVWRGLKPLMTSTKSLSNPLQPVSGDQIPSYFICPIFQDIMRDPHFAADGFTYEADAVRGWFESGRDTSPMTNLKLDSHNLTPNRALRSAIQEWLQKYNLV
Length749
PositionTail
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.07
Grand average of hydropathy-0.441
Instability index48.47
Isoelectric point5.57
Molecular weight85002.67
Publications
PubMed=24352233

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04519
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.47|      39|      52|     338|     377|       1
---------------------------------------------------------------------------
  338-  377 (65.70/67.66)	QCD.......KMRMDYDDSFDVYlSADDDSV..DVVHVLEKQV.FLEPSS
  384-  432 (52.78/47.34)	SCEfsqsdiiEATMLFDPSLRIQ.EGDNDSVykGFLHNTEVAIkILKPNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.06|      28|      52|     591|     619|       2
---------------------------------------------------------------------------
   58-   83 (27.41/10.93)	RSPLKAVTqsEVNQELE.....RQEVEEMLD....
  591-  618 (48.96/27.74)	RPSLNIVT..EVQHALE.....NDHLHRILDPSAG
  643-  673 (38.69/14.65)	RPDLG..S..EVWRGLKplmtsTKSLSNPLQPVSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.30|      26|      51|     460|     487|       3
---------------------------------------------------------------------------
  460-  487 (44.15/39.25)	LIGVCPDSlaLIYEYL.PNGSLED.RLNCK
  512-  539 (40.15/28.46)	LHSILPCS..IIHSNLsPKYVLLDaNFSCK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.67|      22|      53|     233|     256|       4
---------------------------------------------------------------------------
  233-  256 (31.61/24.14)	QLQQALKKAERARQEASeeSERRQ
  289-  310 (36.06/21.38)	KLSKDLKKLTQAAGEFS..SLERQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04519 with Med32 domain of Kingdom Viridiplantae
Unable to open file!