<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04517

Description Uncharacterized protein
SequenceMGSSREVVEEARKGMVVENKVFVAVSKVLKESKSTLSWALQNSNGKKICIIYVHVPAKMIPMPMGGKFPASQVGEKELNAFREQEDKEMHKILDGYLQCCAQVGAHAEKIHIEMDSIEEGIVEIITQQRIGRLVMGAAADSRFSRKMVEPKSIKANYVRQHAPDFCHIRFICRGRLICVREGLRQPSSDIEGRSSNSLESDQIDAGILSQVLDSIRISDFGGSEGSSDRFDQSSRASFSQSSILSLEAQSAFSSPCSSFSREGVRESDLELLVLPETKIKHQESSPPSVLERSMNDDLYDQLVQAMEEADNSKREAFEESMRRRKAEKEAMEAIRKAKTAERLYFEEVRRRKDQEEELAKRKEELEFTKCQLKKVLQELQKASDQRLSLETQYEKSKLTEKEMEEKMFSAVDLLQKYKNEREELQVERDRALQEAEVLRKQFPQGTSSSHVPFFFSEFSFSDLEKATDSFHPSLKIGEGGYGSIYKGFLRQTQVAVKVLNPNSRQGPREFGQEVDVLSKLRHPNLVTLIGACPESWALVYEYLSGGSLEDRLVCKDNTPPLAWQTRIQIATELCAVLIFLHSSRPTSIIHGDIKPSNILLDDNFVCKLADFGICRVISHSKTSLEETTRCCTTEPKGTFTYMDPEFLTTGELTPKSDIYSFGIILLRLLTGRPAMGITKEVEYALGNGNLNCLLDPSAGDWPFVKAEQLARMALRCCDMNGRNRPDLESDIWRVLEPMKASSRSLSMLGPTSDDQAPHYFICPIFQELMEDPQIASDGFTYEAEAIRGWLDSGHDTSPMTDAKLANHDFIPNHALRSAIQELDQFSDGFQAPVSSVQEAEVKAFQECERKEALDMLDDCLRICALKEIPSKKVYIEKETVTDGILELISQLRITNFVMGAGPNSKYSRRMTKPLSKKANYVLHCAPDFCHIWFVCKDQLIYTREGVKQPYVDVERRPSNVSDNDKPDAGISSQELSFGLRLPDFDEYESSPDSFDQSPGVSLSQSSTFLSEMESVLSSPSSSFAIKEVREFGLQLLALPQTINQYQDLSPPSVLEENKMSDDDPYEQLEQAMTEAENSKREAFEESMRRLKAEKKALVAARKVKAAQRLYFEELRQRKEIQEELAENKKEIEVTKSLLEKVSQELQEALHQKLTLESQFEKSCNSEKEMEDKLLSAVDLLQKFKNRRDELHVERDHALLEAKELRKQLSQGPSSSCVLMFSEFSLSDLEVATNYFDPSLKIGGGGNGSTYKGFLHHIEVAIKMLKPNTIHGAREFKKEMDILSKLRHPNLVTLFGACPESCALVFEYLPRGSLEDRLNCKDNTHPLPWQTRIQIATQLCSVLNFLHSRQPSSIIHGDLKPANILLDDNFVCKLRNFGICHIISNGGTSVEQTMGFITSDLKGTFTHMDPEFLATGELTPKSDIYSFGVILLRLLTGKPAVGITKEVECALDKCNLICVLDPTAGDWPFVQAEQLARMALRCCDMNQRNRPDLALDIWRVLEPMKATSQHLSKFLLASEDRAPHYFICPIFQEIMEDPQIASDGFTYEAEAIRGWLESGHYTSPMTNVSLANHDLIPNRALRSAIQEWLQHHSSG
Length1594
PositionTail
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.07
Grand average of hydropathy-0.436
Instability index50.69
Isoelectric point5.44
Molecular weight180015.67
Publications
PubMed=24352233

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04517
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     261.61|      52|      85|      94|     145|       1
---------------------------------------------------------------------------
   94-  143 (74.16/40.31)	.....................................DGYLQCCAQVGAHAEKIHIEMDSIEEGIV.EIIT.QQRIGRLVMGAAADSRF
  144-  230 (59.63/31.04)	SRkmvepksikanyvrqhapdfchirficrgrlicvrEGLRQPSSDIEGRSSN.SLESDQIDAGILsQVLD.SIRISDFGGSEGSSDRF
  857-  906 (72.23/39.08)	.....................................DDCLRICALKEIPSKKVYIEKETVTDGIL.ELIS.QLRITNFVMGAGPNSKY
  907-  994 (55.59/28.46)	SRrmtkplskkanyvlhcapdfchiwfvckdqliytrEGVKQPYVDVERRPSN.VSDNDKPDAGISsQELSfGLRLPDFDEYESSPDSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     199.17|      28|      28|     305|     332|       2
---------------------------------------------------------------------------
  283-  303 (23.98/10.04)	......ESSPPSVLERSMNDDLYD.QLV
  304-  331 (49.51/28.66)	QAMEEADNSKREAFEESMRRRKAEKEAM
  332-  358 (40.86/22.35)	EAIRKAKTAERLYFEE.VRRRKDQEEEL
 1070- 1097 (46.75/26.64)	QAMTEAENSKREAFEESMRRLKAEKKAL
 1098- 1124 (38.07/20.32)	VAARKVKAAQRLYFEE.LRQRKEIQEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|    1887.87|     469|     763|     146|     828|       3
---------------------------------------------------------------------------
  359-  828 (944.40/630.10)	AKRKEELEFTKCQLKKVLQELQKASDQRLSLETQYEKSKLTEKEMEEKMFSAVDLLQKYKNEREELQVERDRALQEAEVLRKQFPQGTSSSHVpFFFSEFSFSDLEKATDSFHPSLKIGEGGYGSIYKGFLRQTQVAVKVLNPNSRQGPREFGQEVDVLSKLRHPNLVTLIGACPESWALVYEYLSGGSLEDRLVCKDNTPPLAWQTRIQIATELCAVLIFLHSSRPTSIIHGDIKPSNILLDDNFVCKLADFGICRVISHSKTSLEETTRCCTTEPKGTFTYMDPEFLTTGELTPKSDIYSFGIILLRLLTGRPAMGITKEVEYALGNGNLNCLLDPSAGDWPFVKAEQLARMALRCCDMNGRNRPDLESDIWRVLEPMKASSRSLSMLGPTSDDQAPHYFICPIFQELMEDPQIASDGFTYEAEAIRGWLDSGHDTSPMTDAKLANHDFIPNHALRSAIQE.LDQFSDG
 1125- 1594 (943.48/624.53)	AENKKEIEVTKSLLEKVSQELQEALHQKLTLESQFEKSCNSEKEMEDKLLSAVDLLQKFKNRRDELHVERDHALLEAKELRKQLSQGPSSSCV.LMFSEFSLSDLEVATNYFDPSLKIGGGGNGSTYKGFLHHIEVAIKMLKPNTIHGAREFKKEMDILSKLRHPNLVTLFGACPESCALVFEYLPRGSLEDRLNCKDNTHPLPWQTRIQIATQLCSVLNFLHSRQPSSIIHGDLKPANILLDDNFVCKLRNFGICHIISNGGTSVEQTMGFITSDLKGTFTHMDPEFLATGELTPKSDIYSFGVILLRLLTGKPAVGITKEVECALDKCNLICVLDPTAGDWPFVQAEQLARMALRCCDMNQRNRPDLALDIWRVLEPMKATSQHLSKFLLASEDRAPHYFICPIFQEIMEDPQIASDGFTYEAEAIRGWLESGHYTSPMTNVSLANHDLIPNRALRSAIQEwLQHHSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     248.25|      82|     761|     146|     277|       4
---------------------------------------------------------------------------
  146-  277 (131.58/78.62)	KMVEPKSIKANYVRQHAPDFCHIRFICRGRLICVR.eglrqpssdiegrssnslesdqidagilsqvldsirisdfggsegssdrfDQSSRASFSQSSILSLEAQSAFSSPCSSFSREGVRESDLELLVLPET
  909-  943 (50.85/25.61)	RMTKPLSKKANYVLHCAPDFCHIWFVCKDQLIYTR..................................................................................................
  995- 1041 (65.82/35.44)	...................................egvkqpyvdverrpsnvsdndkpdagissqelsfglrlpdfdeyesspdsfDQSPGVSLSQSSTFLSEMESVLSSPSSSFAIKEVREFGLQLLALPQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.45|      25|     761|      69|      93|       5
---------------------------------------------------------------------------
   69-   93 (44.58/22.38)	PASQVGEKELNAFREQEDKEMHKIL
  832-  856 (43.88/21.93)	PVSSVQEAEVKAFQECERKEALDML
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04517 with Med32 domain of Kingdom Viridiplantae
Unable to open file!