<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04515

Description Uncharacterized protein
SequenceMADKQLILVVEGTAAMGPYWSTIVSDYLDKIIRSFCANDMTTQIQKPSSIASGSTFELALVVFNTHGPYSASLVQRSGWTRDMDNFFSWLSSITFSGGGWNDVATAEGLAEALMMFAIPQNGYRSEQNLDGKRHCILVSASNPYPLPTPVYRPAIENVEQGENGEAQAENLLYDAETVSKWFGQCSVSLSVVCPKMLPKLKAIYNAGKRNQRAVDPAVDVKQAHFFVQISDSFMEALAALNRSGLAQNQSPATTLPPGSGPPNSMPPVNGSIMNKAPMSTGNVPQATVKIEPSTVTSMVSGPAIPHMPSVPRAAAQSVPSLQASSPPSVSQELTTTNENAPELKPINSNSMSQPLRPVGAILNNISQARVALSGGTSLGLPSMGGNAIGMHMSNMISNGMASNVPPSQTVLSSGQSGISALSGTGGIAGASHPVQNSALGSFSTATSNVSGNSNLGISQPLTNLQGNVSNTMGQTVSGIGQGNVSAMTQSGNGMNPNMISNLGSTGAPSGTGSMMPTPGMPQQVQPGMQLNNSAANMSMSQQAPSSLQSSQSKYVKVWEGNLSGQRQGQPVFITRLEGYRNATASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLAQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGVLRLLSEKRELPLQVRYKVGGKLLEKTSAPEKQMGAIEICQKVPENSSTFRYRN
Length721
PositionUnknown
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.05
Grand average of hydropathy-0.203
Instability index47.50
Isoelectric point9.00
Molecular weight76373.96
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04515
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     159.07|      26|      26|     429|     454|       1
---------------------------------------------------------------------------
  353-  377 (31.12/12.03)	QPLRPV.GAILN.NIS.QARVALS..GGTS
  378-  403 (27.07/ 9.47)	LGLPSMGGNAIGmHMS.NMISN.G..MASN
  405-  426 (28.53/10.39)	PPSQTV....LS.SGQ.SGISALS..GTGG
  429-  454 (45.17/20.90)	GASHPVQNSALG.SFS.TATSNVS..GNSN
  456-  483 (27.18/ 9.54)	GISQPLTN.LQG.NVSnTMGQTVSgiGQGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     206.83|      64|      67|     194|     257|       2
---------------------------------------------------------------------------
  194-  257 (105.74/53.83)	PKMLPKLK.AIYNAGKRNQRAVDPA.VDVKQAHFFVQISDSFMEALAALNRSGLAQNQSPATTLPP
  262-  327 (101.08/51.16)	PNSMPPVNgSIMNKAPMSTGNVPQAtVKIEPSTVTSMVSGPAIPHMPSVPRAAAQSVPSLQASSPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.22|      10|      16|     520|     529|       3
---------------------------------------------------------------------------
  520-  529 (20.39/13.10)	MPQQVQPGMQ
  539-  548 (17.83/10.28)	MSQQAPSSLQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04515 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LNRSGLAQNQSPATTLPPGSGPPNSMPPVNGSIMNKAPMSTGNVPQATVKIEPSTVTSMVSGPAIPHMPSVPRAAAQSVPSLQASSPPSVSQELTTTNENAPELKPINSNSMSQPLRPVGA
2) NVSGNSNLGISQPLTNLQGNVSNTMGQTVSGIGQGNVSAMTQSGNGMNPNMISNLGSTGAPSGTGSMMPTPGMPQQVQPGMQLNNSAANMSMSQQAPSS
3) PSMGGNAIGMHMSNMISNGMASNVPPSQTVLSSGQSGI
240
448
381
360
546
418










Molecular Recognition Features






MoRF SequenceStartStop




NANANA