<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04514

Description Uncharacterized protein
SequenceMDNFFSWLSSITFSGGGWNDVATAEGLAEALMMFAIPQNGYRSEQNLDGKRHCILVSASNPYPLPTPVYRPAIENVEQGENGEAQAENLLYDAETVSKWFGQCSVSLSVVCPKMLPKLKAIYNAGKRNQRAVDPAVDVKQAHFFVQISDSFMEALAALNRSGLAQNQSPATTLPPGSGPPNSMPPVNGSIMNKAPMSTGNVPQATVKIEPSTVTSMVSGPAIPHMPSVPRAAAQSVPSLQASSPPSVSQELTTTNENAPELKPINSNSMSQPLRPVGAILNNISQARVALSGGTSLGLPSMGGNAIGMHMSNMISNGMASNVPPSQTVLSSGQSGISALSGTGGIAGASHPVQNSALGSFSTATSNVSGNSNLGISQPLTNLQGNVSNTMGQTVSGIGQGNVSAMTQSGNGMNPNMISNLGSTGAPSGTGSMMPTPGMPQQVQPGMQLNNSAANMSMSQQAPSSLQSSQSKYVKVWEGNLSGQRQGQPVFITRLEGYRNATASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLAQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGVLRLLSEKRELPLQVRYKVGGKLLEKTSAPEKQMGAIEICQKVPENSSTFRYRN
Length639
PositionUnknown
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.05
Grand average of hydropathy-0.237
Instability index50.86
Isoelectric point9.18
Molecular weight67403.84
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04514
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     417.00|      74|      75|     225|     298|       1
---------------------------------------------------------------------------
  157-  216 (79.79/20.53)	..A.LNRSGLAQNQSPAT..TLPPG......SGPPNS......MPPVNGSIMNKA......PMST..GNVPQATVKIEPSTVTSM
  225-  298 (113.07/31.27)	MPS.VPRAAAQSVPSLQA..SSPPSVSQELTTTNENAP....ELKPINSNSMSQPL....RPVGAILNNISQARVALSGGTSLGL
  310-  375 (82.62/21.44)	MSNmISNGMASNVPPSQTvlSSGQSGISALSGTGGIAG....ASHPV.QNS..............ALGSFSTATSNVSGNSNLGI
  394-  458 (90.59/24.01)	VSG.IGQGNVSAMTQSGN..GMNPNMISNLGSTGAPSG....TGSMMPTPGMPQQV....QP.GMQLNN.SAANMSMS.......
  459-  522 (50.93/11.21)	......QQAPSSLQSSQS..KYVKVWEGNLSGQRQGQPvfitRLEGYRNATASETLaanwPPTMQIVRLISQ.............
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04514 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LNRSGLAQNQSPATTLPPGSGPPNSMPPVNGSIMNKAPMSTGNVPQATVKIEPSTVTSMVSGPAIPHMPSVPRAAAQSVPSLQASSPPSVSQELTTTNENAPELKPINSNSMSQPLRPVGA
2) NVSGNSNLGISQPLTNLQGNVSNTMGQTVSGIGQGNVSAMTQSGNGMNPNMISNLGSTGAPSGTGSMMPTPGMPQQVQPGMQLNNSAANMSMSQQAPSS
3) PSMGGNAIGMHMSNMISNGMASNVPPSQTVLSSGQSGI
158
366
299
278
464
336










Molecular Recognition Features






MoRF SequenceStartStop




NANANA