<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04512

Description Uncharacterized protein
SequenceMSNRGGGMLGNHHLQQQQQHHHHQQQQQQHQQQHSNNSSSSNKPEWLQQYDLIGKIGEGTYGLVFLARVKPPSPHRGKSIAIKKFKQSKDGDGISPTAIREIMLLREISHENVVKLVNVHINPADMSLYLAFDYAEHDLYEIIRYHRDKVNQPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGDGEEQGVVKIADFGLARVYQAPLKQLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKGTPNHFQLDQLDKIFKVLGHPTPDKWPILVNLPHWQQDTQHIQGHKYDNPGLYSVVHLSPKTPAYDLLSRMLEYDPRKRLTAAQALDHEYFKMEPLPGRNAFVPLRPDEKVVNYPARPVDSNTHFEGTATIQQPQQAPPSNAVAGNMQGSHIVPNRNVPRQMNMVGMQRVQPQGIAPYNISAQAGMGGGMNPGGIPMQRGVAAQAHPQQQLRRKDPGMLPGYPPQQKSRRF
Length501
PositionKinase
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.08
Grand average of hydropathy-0.589
Instability index44.28
Isoelectric point9.40
Molecular weight56576.84
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
cyclin-dependent protein serine/threonine kinase activity	GO:0004693	IBA:GO_Central
RNA polymerase II CTD heptapeptide repeat kinase activity	GO:0008353	IBA:GO_Central

GO - Biological Process
protein phosphorylation	GO:0006468	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04512
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.40|      14|      15|     470|     483|       1
---------------------------------------------------------------------------
    7-   20 (27.91/13.50)	GMLGNHHLQQQQQH
  470-  483 (25.26/11.52)	GVAAQAHPQQQLRR
  487-  500 (27.23/13.00)	GMLPGYPPQQKSRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.95|      14|      20|     260|     278|       3
---------------------------------------------------------------------------
  260-  276 (21.95/25.80)	LKPLFQgaeVKG..TPNHF
  281-  296 (22.00/ 8.38)	LDKIFK...VLGhpTPDKW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.73|      11|      20|     382|     392|       7
---------------------------------------------------------------------------
  382-  392 (20.79/ 9.56)	VNYPARPVDSN
  401-  411 (19.94/ 8.89)	IQQPQQAPPSN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04512 with CDK8 domain of Kingdom Viridiplantae
Unable to open file!