<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04511

Description Uncharacterized protein
SequenceMADKQLILVVEGTAAMGPYWSTIVSDYLDKIIRSFCANDMTTQKPSSIASGSTFELALVVFNTHGPYSASLVQRSGWTRDMDNFFSWLSSITFSGGGWNDVATAEGLAEALMMFAIPQNGYRSEQNLDGKRHCILVSASNPYPLPTPVYRPAIENVEQGENGEAQAENLLYDAETVSKWFGQCSVSLSVVCPKMLPKLKAIYNAGKRNQRAVDPAVDVKQAHFFVQISDSFMEALAALNRSGLAQNQSPATTLPPGSGPPNSMPPVNGSIMNKAPMSTGNVPQATVKIEPSTVTSMVSGPAIPHMPSVPRAAAQSVPSLQASSPPSVSQELTTTNENAPELKPINSNSMSQPLRPVGAILNNISQARVALSGGTSLGLPSMGGNAIGMHMSNMISNGMASNVPPSQTVLSSGQSGISALSGTGGIAGASHPVQNSALGSFSTATSNVSGNSNLGISQPLTNLQGNVSNTMGQTVSGIGQGNVSAMTQSGNGMNPNMISNLGSTGAPSGTGSMMPTPGMPQQVQPGMQLNNSAANMSMSQQAPSSLQSSQSKYVKVWEGNLSGQRQGQPVFITRLEGYRNATASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLAQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGVLRLLSEKRELPLQVRYKVGGKLLEKTSAPEKQMGAIEICQKVPENSSTFRYRN
Length719
PositionUnknown
OrganismSpinacia oleracea (Spinach)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> Caryophyllales> Chenopodiaceae> Chenopodioideae> Anserineae> Spinacia.
Aromaticity0.05
Grand average of hydropathy-0.205
Instability index47.61
Isoelectric point9.00
Molecular weight76132.67
Publications
PubMed=24352233

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04511
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     159.07|      26|      26|     427|     452|       1
---------------------------------------------------------------------------
  351-  375 (31.12/10.21)	QPLRPV.GAILN.NIS.QARVALS..GGTS
  376-  401 (27.07/ 8.01)	LGLPSMGGNAIGmHMS.NMISN.G..MASN
  403-  424 (28.53/ 8.80)	PPSQTV....LS.SGQ.SGISALS..GTGG
  427-  452 (45.17/17.84)	GASHPVQNSALG.SFS.TATSNVS..GNSN
  454-  481 (27.18/ 8.06)	GISQPLTN.LQG.NVSnTMGQTVSgiGQGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     206.83|      64|      67|     192|     255|       2
---------------------------------------------------------------------------
  192-  255 (105.74/53.11)	PKMLPKLK.AIYNAGKRNQRAVDPA.VDVKQAHFFVQISDSFMEALAALNRSGLAQNQSPATTLPP
  260-  325 (101.08/50.47)	PNSMPPVNgSIMNKAPMSTGNVPQAtVKIEPSTVTSMVSGPAIPHMPSVPRAAAQSVPSLQASSPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.22|      10|      16|     518|     527|       3
---------------------------------------------------------------------------
  518-  527 (20.39/ 9.12)	MPQQVQPGMQ
  537-  546 (17.83/ 7.14)	MSQQAPSSLQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04511 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LNRSGLAQNQSPATTLPPGSGPPNSMPPVNGSIMNKAPMSTGNVPQATVKIEPSTVTSMVSGPAIPHMPSVPRAAAQSVPSLQASSPPSVSQELTTTNENAPELKPINSNSMSQPLRPVGA
2) NVSGNSNLGISQPLTNLQGNVSNTMGQTVSGIGQGNVSAMTQSGNGMNPNMISNLGSTGAPSGTGSMMPTPGMPQQVQPGMQLNNSAANMSMSQQAPSS
3) PSMGGNAIGMHMSNMISNGMASNVPPSQTVLSSGQSGI
238
446
379
358
544
416










Molecular Recognition Features






MoRF SequenceStartStop




NANANA